Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3912 ATGGTCAGGTATCCGGAGCTTCTTGATCTGATCTCTAGTGACAGGGAATGGGACTTGACTAGAAATGATGCTGGAGGTTCTGTTAGTGAGAACAATGAACTTGAGCTGAGACTTGGATTGCCAGGAGGAGGGGGGCTTGCAGGAGGAAGCAGCTGCTTGAATATTAACCATGAAAGTGGTGAATTTCTTCTCTCTTCTGCTAATCCCTTTCCTTCTTGTTTGAACATTAGAAGTAACAAAAGGGCGCTTTATGAAAAAGCTGAAGGAATAGCAGGAGATGGGAATTGGTTGGATAGAAATGATGAATTCAAACCCCACAAGCTGATTTTCTCTGAGAAAACAGCTGAGAAGGTGTCTCCTCTTACTCCTTGTCTTAGTGCTTCCTTACCATCTTCAGCTTTTCAGATGGAAGCACAGAAGCTGTCTCAACAATCAAAATCTTCATATTTACAACATTTATTGATGCCTCAGAAATTGGACTTGGTGTCAGAAGAGCCATCAAAGCCATGCAGTTTGAAAACAGCTGAGTTTCCATACTTAAATGGGAAATCATGTCCCAACACTGGTTCAGTTCCTAAAGATTCATCTGAACCTAAACACCATGACAAAAGGGCTTCAGTTGCATCAGCTGTTGGTTGGCCCCCCATCCGTTCTTTCAGGAAGAACTTTGCTGCCCCCCGCTCTTCAAAACCTAACCCTCTTGAGTTGTCAAAAGAAACTGTGCAGGAGGAGAATGGCTCAAAATCTGACTGTTGCAATGAACAAATGTTTGTAAAAGTGTGTATGGATGGGGTTCCCATTGGAAGAAAACTGAATCTCCAAGCCTATAGTAGTTACGATCAACTGTCTGCTGGCATAGACGAACTCTTCCACTGTTTTCTTGCAGCACAAAGAAATTATCTGGCTGCTGAAGATGGGAGAAAGATGGAAAAAATAGCTTCATTATCTGATTCCAAACACAAAAATGGTCTGTACACTCTGGTTTACTATGATAATGAAGGGGACCGGATGCTTGTTGGTGATGTCCCATGGAACATGTTTGTTTCCACTGTGAAGAGGCTACATGTGTTAAAGAGCTCTGCCATTGCCATTGAAAAGAAATGA 1104 42.39 MVRYPELLDLISSDREWDLTRNDAGGSVSENNELELRLGLPGGGGLAGGSSCLNINHESGEFLLSSANPFPSCLNIRSNKRALYEKAEGIAGDGNWLDRNDEFKPHKLIFSEKTAEKVSPLTPCLSASLPSSAFQMEAQKLSQQSKSSYLQHLLMPQKLDLVSEEPSKPCSLKTAEFPYLNGKSCPNTGSVPKDSSEPKHHDKRASVASAVGWPPIRSFRKNFAAPRSSKPNPLELSKETVQEENGSKSDCCNEQMFVKVCMDGVPIGRKLNLQAYSSYDQLSAGIDELFHCFLAAQRNYLAAEDGRKMEKIASLSDSKHKNGLYTLVYYDNEGDRMLVGDVPWNMFVSTVKRLHVLKSSAIAIEKK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104063701 104066766 - Tan0001004.2 Tan01g3912 741336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3912 367 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 363 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
Tan01g3912 367 MobiDBLite consensus disorder prediction 183 207 - -
Tan01g3912 367 MobiDBLite consensus disorder prediction 222 247 - -
Tan01g3912 367 Pfam AUX/IAA family 33 361 IPR033389 -
Tan01g3912 367 SUPERFAMILY CAD & PB1 domains 246 356 - -
Tan01g3912 367 ProSiteProfiles PB1 domain profile. 255 359 IPR053793 -
Tan01g3912 367 MobiDBLite consensus disorder prediction 233 247 - -
Tan01g3912 367 Gene3D - 250 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3912 K14484 - - csv:101219386 538.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3912 Tan-Chr1:104063701 Tan01g3914 Tan-Chr1:104063701 3.20E-171 dispersed
Tan01g3911 Tan-Chr1:104063701 Tan01g3912 Tan-Chr1:104063701 1.80E-186 tandem
Tan01g3912 Tan-Chr1:104063701 Tan01g3913 Tan-Chr1:104063701 1.70E-201 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g11 . . . . . . Bma04g00134 . . . Cma01g01443 . Car09g00554 . . . Cpe06g00483 . . . . . . . . . . . . . . . . . . . Csa03g04540 Chy04g00163 . . . . . . . . . Sed12g1387 . . . . . . . Cpe02g00505 Bhi09g02562 Tan01g3912 Cmetu04g3043 . Hepe01g2211 Mch11g0759 . . . . . . . . . . . Cme04g00187
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014199 0 1 0 0 0 0 2 0 0 1 0 0 0 1 1 1 0 0 2 1 1 1 1 1 1 0 1 3 4 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26527 PF02309 AUX_IAA 3.20E-57 CL0072 Tan TR