Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3920 ATGTGTTTTTCTTTTGCCTTTTACTACCTGCTATCTTTTCATGACTTCCCAGAAAAAAACATAAAATGTCTCTATTCTCATATTGTTGTAGAATTACTCTATTCATTTCATGCTATGTTTTTGCAGGACACATTCAATACTCTCTTCTTTATTGTGGATCTTCATGCGATCACATTACCGTATGATACACAGCAACTATGTAAAACAACAAGAAATACAGCGGCTATTTACTTAGCATGTGGCATAGATACCTCCAAGGCTTCTGTCTTCGTTCAGTCTCATGTCCGTGCTCATGTAGAGCTGATGTGGCTTCTTAGTTCAGCTGCCCCAATTGGTTGGCTGAACAGGATGATTCAGTTTAAGGAGAAATCACGCAAGGCGGGGGATGAAAATGTTGGCGTTGCACTTCTCACTTATCCTGTCCTAATGGCTTCTGATATTCTTCTATATCAGTCAGACTTTGTCCCTGTTGGCGAGGATCAAAAGCAGCATCTTGAGTTGACTCGTGAGCTGGCTGAGCGTGTTAATTATCTATACGGTGGAAGGAAATGGAAGAAATTAGGAGGGAGAGGCGGGGATATTTTCAAGGTTCCTGAGCCACTTATACCTCCAGCTGGTGCACGGGTTATGTCCCTCACTGATGGTCTTTCTAAGATGTCCAAATCTGCTCCTTCTGACCAATCCAGAATCAATCTTCTCGACTCAAAAGATGTAATCGTGAGCAAGATAAAACGTTGCAAAACGGACTCATTTCCAGGGTTGGAATTTGACAATCCAGAAAGACCCGAATGCAACAATCTTCTTACAATTTACCAACTCGTTTCTGGAAAAACAAAAGAGGATGTTAAGCAGGAGTGTGGAAATATGAATTGGGGGACATTTAAAAGCCTTTTAGCCGATGCTTTGGTCGATCATCTCCATCCTATCCAGGTCCGCTACAATGAAATTATATCTGATTCAGCTTATTTGGATGAAGTCCTGGCCGATGGTGCTAGAAAAGCTTCAAGTATTGCAGATGTTACTCTCAATAATGTCTATCAAGCTATGGGTTTTTTTCGGAGATGA 1065 41.22 MCFSFAFYYLLSFHDFPEKNIKCLYSHIVVELLYSFHAMFLQDTFNTLFFIVDLHAITLPYDTQQLCKTTRNTAAIYLACGIDTSKASVFVQSHVRAHVELMWLLSSAAPIGWLNRMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGDIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDSKDVIVSKIKRCKTDSFPGLEFDNPERPECNNLLTIYQLVSGKTKEDVKQECGNMNWGTFKSLLADALVDHLHPIQVRYNEIISDSAYLDEVLADGARKASSIADVTLNNVYQAMGFFRR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104071105 104080234 - Tan0006002.4 Tan01g3920 741344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3920 354 Gene3D HUPs 40 350 IPR014729 -
Tan01g3920 354 Gene3D - 211 321 - -
Tan01g3920 354 FunFam Tryptophan--tRNA ligase 209 319 - -
Tan01g3920 354 SUPERFAMILY Nucleotidylyl transferase 36 351 - -
Tan01g3920 354 CDD TrpRS_core 40 303 IPR002306 GO:0000166(InterPro)|GO:0004830(InterPro)|GO:0005524(InterPro)|GO:0006436(InterPro)
Tan01g3920 354 Pfam tRNA synthetases class I (W and Y) 40 306 IPR002305 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Tan01g3920 354 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 39 351 IPR050203 GO:0004830(PANTHER)|GO:0005739(PANTHER)|GO:0006436(PANTHER)|GO:0009507(PANTHER)
Tan01g3920 354 PRINTS Tryptophanyl-tRNA synthetase signature 218 228 IPR002306 GO:0000166(InterPro)|GO:0004830(InterPro)|GO:0005524(InterPro)|GO:0006436(InterPro)
Tan01g3920 354 PRINTS Tryptophanyl-tRNA synthetase signature 153 174 IPR002306 GO:0000166(InterPro)|GO:0004830(InterPro)|GO:0005524(InterPro)|GO:0006436(InterPro)
Tan01g3920 354 PRINTS Tryptophanyl-tRNA synthetase signature 76 95 IPR002306 GO:0000166(InterPro)|GO:0004830(InterPro)|GO:0005524(InterPro)|GO:0006436(InterPro)
Tan01g3920 354 NCBIfam tryptophan--tRNA ligase 37 351 IPR002306 GO:0000166(InterPro)|GO:0004830(InterPro)|GO:0005524(InterPro)|GO:0006436(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3920 K01867 - - csv:101219148 576.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3920 Tan-Chr1:104071105 Tan01g3922 Tan-Chr1:104073787 2.30E-158 dispersed
Tan01g3919 Tan-Chr1:104071105 Tan01g3920 Tan-Chr1:104071105 4.10E-208 tandem
Tan01g3920 Tan-Chr1:104071105 Tan01g3921 Tan-Chr1:104073457 2.30E-158 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g9 . . . . . . . . . . Cma01g01442 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02321 Csa03g04541 Chy04g00162 . . . Bda01g00942 . . . . . . Cmo01g01496 . . . . . . Cpe02g00506 Bhi09g02566 Tan01g3920 . . . . . . . . . . . . . . . Cme04g00186
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004388 1 5 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 8 1 42