Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3928 ATGATGGCTGTGACCTCCGGCTGCAAGGACGCTGCTAGCAAGATGAGCAGCTTGGATAATGGCAAGTATGTTAGGTACACACCTGAGCAAGTCGAAGCTCTTGAGAGGCTTTATTATGAATGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTCATCAGGGAGTGTCCAATTCTCTCTAATATCGAACCCAAGCAGATCAAAGTTTGGTTTCAAAATCGGAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCACGCCTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGTTGCAGAAACAGGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAAACCCAGAATGCGACCCTAGCCACCACTGACACAAGTTGCGAGTCCGTTGTGACTAGTGGTCAACAGAATTTGACTCCGCCGCATCCGCCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTTGCAGCTCGTGCATGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGCGATTGCCGCGCCGTGGACGTTCTAAACGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTTTACATGCAGCTCTATGCACCTACAACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGGTACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTATGTGAAAGATCTCTAAACAATACTCAAAATGGTCCAAGTATGCCACCAGTACAAAACTTTGTAAGAGCAGAAATGCTACCAAGTGGGTATTTGATAAGACCTTGTGAAGGTGGTGGATCAATAATCCATATAGTTGATCACATGGACTTAGAACCTTGGAGCGTGCCTGAGGTTTTGCGACCATTATACAAGTCATCTACTCTACTTGCTCAGAAGAACACAATGGCGGCTTTACGTTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTAACTGGTTGGGGAAGAAGACCTACTGCTCTTCGCGCTCTTAGTCAGAGATTGAGCAGAGGTTTCAACGAAGCAGTTAATGGGTTTACAGACGAGGGATGGTCTTTGTTAGAAAACGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCTCATGGGAAAACAATGATGGGTGCAAATATTTCGTATTCTAATGGCTTGCCATCTATGAGCAATGCAGTGCTTTGTGCCAAAGCATCAATGTTATTGCAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGGTCAGAATGGGCAGACAGCAGTATTGATGCTTACTCAGCTGCAGCAATTAAGACTGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGCCAGGTCATTCTTCCCTTGGCACAAACAGTTGAGCATGAAGAGTTTATGGAAGTTATTAAATTTGAAAACGTGGGCCACTATAGGGATGATATGCTCATGCCTGGTGACATCTTCCTCCTCCAACTTTGCAATGGTGTGGATGAGAATGCTGTTGGAACTTCTGCTGAACTCATCTTTGCTCCGATTGATGCCTCTTTTTCTGATGATGCACCTATTTTACCATCTGGCTTTCGCATCATTCCTCTTGATTCTGGAATGGATGCTTCAAGTCCAAACCGCACACTTGATCTTGCTTCAGCTCTTGATGTGGGACCTGCAGGGAATAGAGCTTCTGGTGATTATGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCGTTCCAATTTTTGTTTGATGTTCACCTTCAAGATAATGTAGCAGCAATGGCACGGCAGTATGTCCGGAGCATTATTGCATCTGTTCAGAGGGTGGCACTGGCTCTTTCCCCTTCGAATTTTGGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAAACACTTGCTCGTTGGATCTGTCAAAGCTATAGGTGCTATATGGGCATGGAATTACTGAAAAATGAAGGAAGAGAATCCGTTCTCAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTACTCTTTGAAGGCATTGCCAAATTTCACATTTGCAAATCAATCTGGACTTGATATGCTTGAGACAACCTTGGTGGCTCTCCAAGACATTACGCTGGAGAAGATTTTTGATGACAATGGAAAGAAAACATTAGCCTCAGAGTTACCACGGATAATGCAGCAGGTATCGATAATGAATCCCCTCTTCTCTTTCCCTACCAACCCAATGATGATCAAATGA 2439 45.35 MMAVTSGCKDAASKMSSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPTALRALSQRLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSHGKTMMGANISYSNGLPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQVILPLAQTVEHEEFMEVIKFENVGHYRDDMLMPGDIFLLQLCNGVDENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRASGDYAGQSGKSKSVMTIAFQFLFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAQTLARWICQSYRCYMGMELLKNEGRESVLKSLWHHSDAVMCYSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASELPRIMQQVSIMNPLFSFPTNPMMIK 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104166355 104173148 - Tan0014720.2 Tan01g3928 741352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3928 812 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677(InterPro)
Tan01g3928 812 CDD START_ArGLABRA2_like 160 375 - -
Tan01g3928 812 Gene3D - 14 88 - -
Tan01g3928 812 FunFam homeobox-leucine zipper protein ATHB-15 201 382 - -
Tan01g3928 812 Pfam START domain 166 374 IPR002913 GO:0008289(InterPro)
Tan01g3928 812 SMART START_1 165 375 IPR002913 GO:0008289(InterPro)
Tan01g3928 812 Gene3D - 200 376 IPR023393 -
Tan01g3928 812 SUPERFAMILY Bet v1-like 165 375 - -
Tan01g3928 812 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Tan01g3928 812 SMART HOX_1 19 85 IPR001356 GO:0003677(InterPro)
Tan01g3928 812 Pfam MEKHLA domain 701 797 IPR013978 -
Tan01g3928 812 ProSiteProfiles START domain profile. 156 370 IPR002913 GO:0008289(InterPro)
Tan01g3928 812 Pfam Homeodomain 22 80 IPR001356 GO:0003677(InterPro)
Tan01g3928 812 Coils Coil 91 118 - -
Tan01g3928 812 CDD bZIP 74 113 - -
Tan01g3928 812 CDD homeodomain 22 82 IPR001356 GO:0003677(InterPro)
Tan01g3928 812 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 17 795 IPR044830 GO:0003700(InterPro)
Tan01g3928 812 FunFam Homeobox-leucine zipper protein REVOLUTA 22 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3928 Tan-Chr1:104166355 Tan06g0255 Tan-Chr6:2072907 0.00E+00 dispersed
Tan01g3927 Tan-Chr1:104165390 Tan01g3928 Tan-Chr1:104166355 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26531 PF01852 START 3.60E-54 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3928 K09338 - csv:101218438 1552.34