Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3930 ATGGAACCACCCCAATATTTCCAGCCCGGATTTTGCTCTCCATTCGCCGCCGAAAAACGCCAGTCCACTTCTGACACCAATAAAACCACCGCCATTCCCGCTGCCGCCGACCATTTCATCGTCGAGGACCTCCTCGACTTTTCTAATGACGACCACCTCCTCTTCACCACCGACGCCACTAATTGCGACAACCAAACCCCTACCTCCACTGATTCCTCTACTCTCACTCTACTCGATTCCGCTCATTTCCACCCCAACAACAATATTGGACACAACTTTAATTTCCTCGACGCCAATTTCTCTACCACCGACCTCTCTCTACCGTACGACGAGCTAGCCGAACTTGAATGGCTTTCCAATTTCGTCGAAGAGTCCTTCTCCACCGACGACTTGGAGAAGCTCAGTCTCATATCCGGGATGAATTCTCGAACCGATGATGGTTCTTCCAAAACCACAGAATTTCAGATCGGAACGAACCGGAACCATTCCGCCGGTTTCCGCCCCGAAATGTCTGTACCGGCGAAAGCCGCCCGAAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCGACAGATTCCTCTTCCGAAACCGACGTTGTCGTCACGGCACATCCAAGCACCGGCAAGAAAACCGCCAAAAAGAAAGAGAGCCCGGACGACACGTCGTCCGGGAACGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGCCCAAAGACGTTGTGTAACGCTTGTGGGGTTCGCTACAAATCCGGCCGCCTCGTACCGGAATACCGACCGGCGGCGAGTCCCACGTTCGTCCTCACGAAGCACTCGAATTCTCACCGTAAAGTTCTGGAACTCCGGCGGCAGAAGGAGATGATGAGAGCACAGCAACCACAGCCACCATTTCTTCATCATCATGAGAATATGGGGTTTGATCGTGTATCCAACGACGACGATTATTTGATCCATCAACACATAGCGCCCGTCTTCGAATAG 1038 53.95 MEPPQYFQPGFCSPFAAEKRQSTSDTNKTTAIPAAADHFIVEDLLDFSNDDHLLFTTDATNCDNQTPTSTDSSTLTLLDSAHFHPNNNIGHNFNFLDANFSTTDLSLPYDELAELEWLSNFVEESFSTDDLEKLSLISGMNSRTDDGSSKTTEFQIGTNRNHSAGFRPEMSVPAKAARSKRSRAAPCIWNSRLSVLSPTDSSSETDVVVTAHPSTGKKTAKKKESPDDTSSGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQQPQPPFLHHHENMGFDRVSNDDDYLIHQHIAPVFE 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104188423 104189631 + Tan0001628.1 Tan01g3930 741354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3930 345 PIRSF Txn_fac_GATA_plant 20 328 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Tan01g3930 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 297 - -
Tan01g3930 345 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g3930 345 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g3930 345 PANTHER GATA TRANSCRIPTION FACTOR 38 305 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan01g3930 345 SMART GATA_3 233 283 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g3930 345 MobiDBLite consensus disorder prediction 217 231 - -
Tan01g3930 345 FunFam GATA transcription factor 229 314 - -
Tan01g3930 345 Pfam GATA zinc finger 239 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g3930 345 CDD ZnF_GATA 238 285 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g3930 345 Gene3D - 232 283 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan01g3930 345 MobiDBLite consensus disorder prediction 197 237 - -
Tan01g3930 345 MobiDBLite consensus disorder prediction 197 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3930 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3930 Tan-Chr1:104188423 Tan04g2676 Tan-Chr4:86143676 1.20E-55 dispersed
Tan02g2548 Tan-Chr2:94013848 Tan01g3930 Tan-Chr1:104188423 3.30E-75 transposed
Tan01g3930 Tan-Chr1:104188423 Tan06g0259 Tan-Chr6:2097840 4.20E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2340 . 6 262 C2C2-Gata Transcription Factor Family AT3G24050 51.3 5.4e-54 208.8
Tan02g2548 . 76 369 C2C2-Gata Transcription Factor Family AT5G25830 52.6 7.9e-68 255.0
Tan01g3930 . 39 345 C2C2-Gata Transcription Factor Family AT5G25830 50.9 9.6e-66 248.1
Tan04g2676 . 96 271 C2C2-Gata Transcription Factor Family AT3G60530 50.5 4.4e-44 175.6
Tan01g1282 . 69 379 C2C2-Gata Transcription Factor Family AT5G66320 50.3 1.1e-67 254.6
Tan01g1282 . 105 379 C2C2-Gata Transcription Factor Family AT3G51080 52.3 5.0e-56 215.7
Tan03g2048 . 103 273 C2C2-Gata Transcription Factor Family AT4G36240 51.4 6.5e-40 161.8
Tan07g1894 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.7 8.0e-136 481.5
Tan01g2093 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.1 1.0e-135 481.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26532 PF00320 GATA 3.10E-15 CL0167 Tan TF