Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3930 ATGGAACCACCCCAATATTTCCAGCCCGGATTTTGCTCTCCATTCGCCGCCGAAAAACGCCAGTCCACTTCTGACACCAATAAAACCACCGCCATTCCCGCTGCCGCCGACCATTTCATCGTCGAGGACCTCCTCGACTTTTCTAATGACGACCACCTCCTCTTCACCACCGACGCCACTAATTGCGACAACCAAACCCCTACCTCCACTGATTCCTCTACTCTCACTCTACTCGATTCCGCTCATTTCCACCCCAACAACAATATTGGACACAACTTTAATTTCCTCGACGCCAATTTCTCTACCACCGACCTCTCTCTACCGTACGACGAGCTAGCCGAACTTGAATGGCTTTCCAATTTCGTCGAAGAGTCCTTCTCCACCGACGACTTGGAGAAGCTCAGTCTCATATCCGGGATGAATTCTCGAACCGATGATGGTTCTTCCAAAACCACAGAATTTCAGATCGGAACGAACCGGAACCATTCCGCCGGTTTCCGCCCCGAAATGTCTGTACCGGCGAAAGCCGCCCGAAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCGACAGATTCCTCTTCCGAAACCGACGTTGTCGTCACGGCACATCCAAGCACCGGCAAGAAAACCGCCAAAAAGAAAGAGAGCCCGGACGACACGTCGTCCGGGAACGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGCCCAAAGACGTTGTGTAACGCTTGTGGGGTTCGCTACAAATCCGGCCGCCTCGTACCGGAATACCGACCGGCGGCGAGTCCCACGTTCGTCCTCACGAAGCACTCGAATTCTCACCGTAAAGTTCTGGAACTCCGGCGGCAGAAGGAGATGATGAGAGCACAGCAACCACAGCCACCATTTCTTCATCATCATGAGAATATGGGGTTTGATCGTGTATCCAACGACGACGATTATTTGATCCATCAACACATAGCGCCCGTCTTCGAATAG 1038 53.95 MEPPQYFQPGFCSPFAAEKRQSTSDTNKTTAIPAAADHFIVEDLLDFSNDDHLLFTTDATNCDNQTPTSTDSSTLTLLDSAHFHPNNNIGHNFNFLDANFSTTDLSLPYDELAELEWLSNFVEESFSTDDLEKLSLISGMNSRTDDGSSKTTEFQIGTNRNHSAGFRPEMSVPAKAARSKRSRAAPCIWNSRLSVLSPTDSSSETDVVVTAHPSTGKKTAKKKESPDDTSSGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQQPQPPFLHHHENMGFDRVSNDDDYLIHQHIAPVFE 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104188423 104189631 + Tan0001628.1 Tan01g3930 741354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3930 345 PIRSF Txn_fac_GATA_plant 20 328 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Tan01g3930 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 297 - -
Tan01g3930 345 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g3930 345 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g3930 345 PANTHER GATA TRANSCRIPTION FACTOR 38 305 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan01g3930 345 SMART GATA_3 233 283 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g3930 345 MobiDBLite consensus disorder prediction 217 231 - -
Tan01g3930 345 FunFam GATA transcription factor 229 314 - -
Tan01g3930 345 Pfam GATA zinc finger 239 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g3930 345 CDD ZnF_GATA 238 285 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g3930 345 Gene3D - 232 283 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan01g3930 345 MobiDBLite consensus disorder prediction 197 237 - -
Tan01g3930 345 MobiDBLite consensus disorder prediction 197 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3930 Tan-Chr1:104188423 Tan04g2676 Tan-Chr4:86143676 1.20E-55 dispersed
Tan02g2548 Tan-Chr2:94013848 Tan01g3930 Tan-Chr1:104188423 3.30E-75 transposed
Tan01g3930 Tan-Chr1:104188423 Tan06g0259 Tan-Chr6:2097840 4.20E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26532 PF00320 GATA 3.10E-15 CL0167 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3930 - - - 0.0