Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g3930 | ATGGAACCACCCCAATATTTCCAGCCCGGATTTTGCTCTCCATTCGCCGCCGAAAAACGCCAGTCCACTTCTGACACCAATAAAACCACCGCCATTCCCGCTGCCGCCGACCATTTCATCGTCGAGGACCTCCTCGACTTTTCTAATGACGACCACCTCCTCTTCACCACCGACGCCACTAATTGCGACAACCAAACCCCTACCTCCACTGATTCCTCTACTCTCACTCTACTCGATTCCGCTCATTTCCACCCCAACAACAATATTGGACACAACTTTAATTTCCTCGACGCCAATTTCTCTACCACCGACCTCTCTCTACCGTACGACGAGCTAGCCGAACTTGAATGGCTTTCCAATTTCGTCGAAGAGTCCTTCTCCACCGACGACTTGGAGAAGCTCAGTCTCATATCCGGGATGAATTCTCGAACCGATGATGGTTCTTCCAAAACCACAGAATTTCAGATCGGAACGAACCGGAACCATTCCGCCGGTTTCCGCCCCGAAATGTCTGTACCGGCGAAAGCCGCCCGAAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCGACAGATTCCTCTTCCGAAACCGACGTTGTCGTCACGGCACATCCAAGCACCGGCAAGAAAACCGCCAAAAAGAAAGAGAGCCCGGACGACACGTCGTCCGGGAACGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGCCCAAAGACGTTGTGTAACGCTTGTGGGGTTCGCTACAAATCCGGCCGCCTCGTACCGGAATACCGACCGGCGGCGAGTCCCACGTTCGTCCTCACGAAGCACTCGAATTCTCACCGTAAAGTTCTGGAACTCCGGCGGCAGAAGGAGATGATGAGAGCACAGCAACCACAGCCACCATTTCTTCATCATCATGAGAATATGGGGTTTGATCGTGTATCCAACGACGACGATTATTTGATCCATCAACACATAGCGCCCGTCTTCGAATAG | 1038 | 53.95 | MEPPQYFQPGFCSPFAAEKRQSTSDTNKTTAIPAAADHFIVEDLLDFSNDDHLLFTTDATNCDNQTPTSTDSSTLTLLDSAHFHPNNNIGHNFNFLDANFSTTDLSLPYDELAELEWLSNFVEESFSTDDLEKLSLISGMNSRTDDGSSKTTEFQIGTNRNHSAGFRPEMSVPAKAARSKRSRAAPCIWNSRLSVLSPTDSSSETDVVVTAHPSTGKKTAKKKESPDDTSSGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQQPQPPFLHHHENMGFDRVSNDDDYLIHQHIAPVFE | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 104188423 | 104189631 | + | Tan0001628.1 | Tan01g3930 | 741354 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g3930 | 345 | PIRSF | Txn_fac_GATA_plant | 20 | 328 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Tan01g3930 | 345 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 234 | 297 | - | - | |
Tan01g3930 | 345 | ProSiteProfiles | GATA-type zinc finger domain profile. | 233 | 269 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g3930 | 345 | ProSitePatterns | GATA-type zinc finger domain. | 239 | 264 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g3930 | 345 | PANTHER | GATA TRANSCRIPTION FACTOR | 38 | 305 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Tan01g3930 | 345 | SMART | GATA_3 | 233 | 283 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g3930 | 345 | MobiDBLite | consensus disorder prediction | 217 | 231 | - | - | |
Tan01g3930 | 345 | FunFam | GATA transcription factor | 229 | 314 | - | - | |
Tan01g3930 | 345 | Pfam | GATA zinc finger | 239 | 273 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g3930 | 345 | CDD | ZnF_GATA | 238 | 285 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g3930 | 345 | Gene3D | - | 232 | 283 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Tan01g3930 | 345 | MobiDBLite | consensus disorder prediction | 197 | 237 | - | - | |
Tan01g3930 | 345 | MobiDBLite | consensus disorder prediction | 197 | 212 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g3930 | Tan-Chr1:104188423 | Tan04g2676 | Tan-Chr4:86143676 | 1.20E-55 | dispersed | |
Tan02g2548 | Tan-Chr2:94013848 | Tan01g3930 | Tan-Chr1:104188423 | 3.30E-75 | transposed | |
Tan01g3930 | Tan-Chr1:104188423 | Tan06g0259 | Tan-Chr6:2097840 | 4.20E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26532 | PF00320 | GATA | 3.10E-15 | CL0167 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g3930 | - | - | - | 0.0 |