Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3934 ATGTCAGCAACCGAAGACGACCAATCCATCAAGCCCAACAAGCGCGTTCGAGATTCCAGCAAGCACCCACTCTACCGCGGCGTTCGAATGCGCGCTTGGGGCAAATGGGTCTCCGAAATCCGCGAGCCCCGCAAGAAATCCCGCATTTGGCTCGGCACCTTCCCCACGCCCGAGATGGCCGCTCGTGCCCACGACGTCGCCGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAATTTCCCTGAACTCGCCCACTCCCTTCCCCGCCCTGTCTCCTTCGCCCCTCGCGATGTCCAAGCCGCCGCCGCTAAGGCTGCTCACATGGACCCTTTCCACTACTCTCCCTCCTCCTCTGTTTCCACTTCCTCCTCTTCTTCCTCTAATTCGTTATTGACCACGCCCATGGACTTATCTTTATCCCCCTCCTCCTCCTCCGCCGCCGCCGCCGCCCACGACGACGACGACGACGACGAGCTCACCGAAATCGTCAAGCTACCCAGCCTCGGCACCAACTACGATCACGTCATCGCCAATAACGAGTTCGTGCTGATGGATTCCACCGAGGGTTGGGTTTATCCGCCGCCCTGGTTACGAACCATGGAGGATTGCGGCTGCAATAACAACGACATTACTGACGAGTTGGGAATTGGGGATAGTAATTTCTTGTGGGGTTATTGA 678 57.67 MSATEDDQSIKPNKRVRDSSKHPLYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPFHYSPSSSVSTSSSSSSNSLLTTPMDLSLSPSSSSAAAAAHDDDDDDELTEIVKLPSLGTNYDHVIANNEFVLMDSTEGWVYPPPWLRTMEDCGCNNNDITDELGIGDSNFLWGY 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104234861 104235710 - Tan0019747.1 Tan01g3934 741358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3934 225 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3934 225 SMART rav1_2 24 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3934 225 MobiDBLite consensus disorder prediction 113 157 - -
Tan01g3934 225 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3934 225 MobiDBLite consensus disorder prediction 113 147 - -
Tan01g3934 225 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677(InterPro)
Tan01g3934 225 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Tan01g3934 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 185 IPR051032 -
Tan01g3934 225 MobiDBLite consensus disorder prediction 1 22 - -
Tan01g3934 225 CDD AP2 23 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3934 225 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3934 225 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3934 225 Pfam AP2 domain 23 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3934 225 MobiDBLite consensus disorder prediction 8 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3934 Tan-Chr1:104234861 Tan02g2561 Tan-Chr2:94197080 1.80E-52 dispersed
Tan06g1802 Tan-Chr6:41488456 Tan01g3934 Tan-Chr1:104234861 7.80E-34 transposed
Tan10g0052 Tan-Chr10:874216 Tan01g3934 Tan-Chr1:104234861 2.50E-33 transposed
Tan01g3934 Tan-Chr1:104234861 Tan06g0265 Tan-Chr6:2144087 1.20E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26533 PF00847 AP2 5.60E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3934 K09286 - csv:101217333 256.144