Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3936 ATGGCCTTTCAATATTCGAACAAGTCATTACAGAGCATAATGATCGACGATGAAAAACAAAGGAGGACGACAGCGCCACAAATTGAGTCGCAAATTTCATCGGAAACGAGCCCACGTGCGCGTCCGGGTTCGAAAGTGGTGAAGCCGCCGAGTCCGGAATCGCCTTGGACTTTGTCTCCTTTACAAACCCCTTCGCCGGTTTTGGTTTATCACTGCATAGCGTCGCTTCATCGGGGGGAAGGGAATATATACTCGATTGCTATTTCGAAAGGCGTGGTGTTTACTGGCTCTGATAGCTGTCGTGTTCGTGCATGGAAGCAGCCGGATTGCATGGAGCGTGGCTATTTCAAGGCCGTCGCTGGTGGAGTCAGGGCCATTGCTGCTTCTGGAAATATGTTGTTCACATCACACAGAGATCTAAGAATCCGGGTATGGAATTTCACAGCATCAGAAAATATGACATCCAAAAAAATCTGTTCACTCCCCAAAAAAACATCCTTCGGCCTCTTATTCTCGAAATTAACGTCAGAAAGCAGTCATCTCCACAAAGACACCATATCCTGCATGGCTTATTACAACGCACAAGATCTCCTCTACACCGCTTCTCACGACAAAACCGTCAAAGCCTGGCGAATCTCCGACCGCAAATGCGTTGACTCTTTCCTTGCCCACGAAGACAAAGTCAACTCCATGACCGTCAACCAAAACGACGGCTGTCTCTTCACCTGCTCCTCCGACGGAACCGTCAAGATCTGGCGACGACTATACCGAGAAAACTCCCACACCCTCACAATGACACTCAAGTTTCAAACTTCCCCTGTAAACGCCGTCGTTCTCAGCACCCATTCCCATTCACTCTACTCCGGATCCTCCGATGGGACCATCAACTTTTGGGAAAAGGAGAAGCTTTCTTACAGATACAATCATGGGGGGTTCTTGCAAGGCCATAGATTTGGGGTGCTGTGTTTGGCGGTGGTGGAGAGGTTGGTATTGAGTGGATCGGAGGACACGACGGTGAGGATATGGAGGAAAGAGGAGGCGGCCGGGGGCTCTTACCATGACTGCTTGGCGGTGCTTGATGGGCATAGAGGTCCGGTTCGATGCCTGGCTGGGAGCTTGGAAATGGAATATCAGAAGATGATGATGGATGAGATGAGTTTTTTGGTTTACAGTGGGAGTTTGGACCAGTCGTTTAAGGTCTGGAGACTGAAGGTGTTGATGGAGGAGAAGAAGAAGAAGGAATCATTGGAGCTTGGGGAATTACAATTTGGTGGCCATGATTTGAAGATGAACAAGCTTTATGAGATGAGTCCTGTGTTGTCTCCTTCTTGGGTTGAGAAAAAGCTTCAAGCTAACTATTTTTGA 1365 48.5 MAFQYSNKSLQSIMIDDEKQRRTTAPQIESQISSETSPRARPGSKVVKPPSPESPWTLSPLQTPSPVLVYHCIASLHRGEGNIYSIAISKGVVFTGSDSCRVRAWKQPDCMERGYFKAVAGGVRAIAASGNMLFTSHRDLRIRVWNFTASENMTSKKICSLPKKTSFGLLFSKLTSESSHLHKDTISCMAYYNAQDLLYTASHDKTVKAWRISDRKCVDSFLAHEDKVNSMTVNQNDGCLFTCSSDGTVKIWRRLYRENSHTLTMTLKFQTSPVNAVVLSTHSHSLYSGSSDGTINFWEKEKLSYRYNHGGFLQGHRFGVLCLAVVERLVLSGSEDTTVRIWRKEEAAGGSYHDCLAVLDGHRGPVRCLAGSLEMEYQKMMMDEMSFLVYSGSLDQSFKVWRLKVLMEEKKKKESLELGELQFGGHDLKMNKLYEMSPVLSPSWVEKKLQANYF 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104262982 104265821 + Tan0021395.1 Tan01g3936 741360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3936 454 MobiDBLite consensus disorder prediction 25 40 - -
Tan01g3936 454 MobiDBLite consensus disorder prediction 14 59 - -
Tan01g3936 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 299 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 299 - -
Tan01g3936 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 342 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 SMART WD40_4 214 253 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 SMART WD40_4 352 402 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 SMART WD40_4 260 299 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 SMART WD40_4 69 106 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 SMART WD40_4 306 343 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 SMART WD40_4 173 211 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 SMART WD40_4 109 146 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 342 - -
Tan01g3936 454 Pfam WD domain, G-beta repeat 216 252 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 Pfam WD domain, G-beta repeat 312 342 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 Pfam WD domain, G-beta repeat 354 401 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 Pfam WD domain, G-beta repeat 263 298 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 Pfam WD domain, G-beta repeat 182 210 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 SUPERFAMILY WD40 repeat-like 72 403 IPR036322 GO:0005515(InterPro)
Tan01g3936 454 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 35 404 IPR045182 -
Tan01g3936 454 Gene3D - 56 167 IPR015943 GO:0005515(InterPro)
Tan01g3936 454 Gene3D - 172 433 IPR015943 GO:0005515(InterPro)
Tan01g3936 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 252 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Tan01g3936 454 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Tan01g3936 454 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Tan01g3936 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515(InterPro)
Tan01g3936 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 252 - -
Tan01g3936 454 CDD WD40 77 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3936 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3936 Tan-Chr1:104262982 Tan04g2672 Tan-Chr4:86074630 4.00E-62 dispersed
Tan01g3936 Tan-Chr1:104262982 Tan02g0857 Tan-Chr2:9505892 1.40E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g302 Blo01g01774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed12g1397 Cmo01g01485 . . . . . . . Bhi09g02581 Tan01g3936 Cmetu04g0169 . . Mch11g0772 . . . . . . . . . . . Cme04g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004018 2 2 2 1 0 1 0 2 1 3 1 1 1 2 3 2 1 2 1 1 1 2 1 2 0 0 2 1 2 1 41