Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3948 ATGACTTCTCTGCAGCTTCTTCTCAAACACATTCCTCAGGCACCGATCAGCGCTGCAGAATTCACTGAGCATTCTCAAAAGCCACTATGTTTGACTCGATCTCTCTCTCTCCCGATACACAAATCGCGCAATACCCGACAGTTGTCTTTCAGAGGATTCAGAATTAGGTGTTCGATTGCAGATACTGTTGGTCGTACTTCTGATGGTCCAGTGCTTAGTAGTTCAGAGGTGCTTGAAAGATTAAGGGCAAGCCGGGAACATCAAGAAAACCAGCAAAAATTCCTTGCCATGTATTCCAGTGTTGTTGGAGGAATTACGACTGATCCAGCTGCTATGGTAATTCCAATTGACGACCACATGGTTCACCGAGGACATGGTGTTTTTGATACTGCTGCCATTGTGGAAGGATATCTCTATGAGCTGGACCAGCACGTCGACCGCATTTTAAGATCAGCATCGATGGCAAAAATTAACCTCCCAGTTTCATTCGATCGGGAGAAGATTAAAAGTACACTCATAAGAACTGTCAGTGCTTCTAAGTGTAGGAATGGATCACTTCGATATTGGCTGTCTGCGGGACCAGGAAATTTTCTAATTTCTTCTTCCGGCTGTCATCAGCCAGCCCTTTATGCAATTGTAGTTCAAGGTAAGCCGCCATCTCATCCAAAAGGCATCAAAGTCATAACTTCATCAATCCCAATGAAACCAACTCAATTTGCAATTATGAAGAGTGTAAATTACCTGCCAAATGTTCTTTCAAGTATGCAAGCAGAAGAAAAAGGTGCTTATGCAGCCATTTGGTTGGATAGTGACGGATTCATTGCTGAAGGGCCTACTATGAACGTGGGTTTTATTACAAAGGATAAGGAATTTCTGATGCCTCACTTCGACAAAATTCTAAGCGGATGCACAGCTAAGAGAATTATAACTCTTGCTGAACGGCTGGTGAAAGAGGGTAGACTTCGGAGAATAAGATGTGAAAATTTAACCATGGAGGAAGGCAAGAAGGCAGAGGAGATGTTGCTTATTGGGAGTGGAGTTCTTGTTTCCCCTGTACTGCAGTGGGATGAGCAGATTATTGGTGATGGTGGATTTTATCTAAGAAATTAG 1110 43.15 MTSLQLLLKHIPQAPISAAEFTEHSQKPLCLTRSLSLPIHKSRNTRQLSFRGFRIRCSIADTVGRTSDGPVLSSSEVLERLRASREHQENQQKFLAMYSSVVGGITTDPAAMVIPIDDHMVHRGHGVFDTAAIVEGYLYELDQHVDRILRSASMAKINLPVSFDREKIKSTLIRTVSASKCRNGSLRYWLSAGPGNFLISSSGCHQPALYAIVVQGKPPSHPKGIKVITSSIPMKPTQFAIMKSVNYLPNVLSSMQAEEKGAYAAIWLDSDGFIAEGPTMNVGFITKDKEFLMPHFDKILSGCTAKRIITLAERLVKEGRLRRIRCENLTMEEGKKAEEMLLIGSGVLVSPVLQWDEQIIGDGGFYLRN 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104334099 104337836 - Tan0022465.3 Tan01g3948 741372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3948 369 PANTHER AMINO-ACID AMINOTRANSFERASE 89 363 IPR050571 GO:0019752(PANTHER)
Tan01g3948 369 Gene3D - 219 366 IPR043132 -
Tan01g3948 369 Gene3D - 73 215 IPR043131 -
Tan01g3948 369 FunFam D-alanine aminotransferase 217 365 - -
Tan01g3948 369 FunFam D-amino-acid transaminase, chloroplastic 73 214 - -
Tan01g3948 369 Pfam Amino-transferase class IV 126 355 IPR001544 GO:0003824(InterPro)
Tan01g3948 369 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 103 363 IPR036038 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3948 K18482 - - csv:101216383 569.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3946 Tan-Chr1:104334099 Tan01g3948 Tan-Chr1:104334099 3.30E-206 dispersed
Tan01g3948 Tan-Chr1:104334099 Tan01g4363 Tan-Chr1:108537433 1.40E-89 dispersed
Tan01g3947 Tan-Chr1:104334099 Tan01g3948 Tan-Chr1:104334099 1.10E-150 tandem
Tan01g3948 Tan-Chr1:104334099 Tan01g3949 Tan-Chr1:104334706 1.60E-210 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g321 Blo01g01769 . . . . Bpe02g00175 . Bma01g02551 . . Cma01g01430 . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0608 . Csa03g04561 . . . . . . . . . . Sed12g1405 Cmo01g01479 . . . . . . Cpe02g00518 Bhi09g02599 Tan01g3948 Cmetu04g1371 . Hepe01g2230 Mch11g0780 . . . . . . . . . . . Cme04g00166
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012240 1 2 1 1 1 0 1 0 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 2 4 1 28