Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3959 ATGGCGGCAATCGTTGCTAACCAAACGTTGATCTTCGTTCCCATTCGACTCTGTTTCTTCAAGCGCCGCTTCTTCAACTTCAATTCAACCCTGTCCATTCGTCTGCCAACTTCCACTTCAACCATTCGAGCTTCTTCGACTGCTTCTATGGAGGCTAGGATCGATCCATCGGATCCTGTTATGGTTGATAAGGAAGTCAACAATATTGAGAATATTTTAGCTTGTTCCATATGTTATGGCCCATTGATTACGGCAGCTGGTTCAGGCCTTTCAGTGGAGTCCACTAATGGATATCAATTGGAATGCGGCACATGTAAAAAGTCTTTCACTGGCAATGAAACTCATTTGGACTTGACGATAGGCAGTGGAATTAACGATGGTGAATCCATGCCTGCTGTCACGGAGATTTTTAGGACTAGATTGGTGTCTTTTCTTTATGAGAGGGGCTGGCGTAAAGGTTTTTCAGTATTGCTTGGTTTTCCTGGCCCAGAAAAGGAGTTTGAGTTGATAAAAGATTTCATGACACCAGTCTTAGGTGGAAACATAATTGATGCAAGTTGTGGAAGTGGAATGTTTTCAAGAATCTTTGCCAAGAGTGGGTTATTTTCCTCTATTGTTGCTTTGGACTACTCGGAGAATATGTTAAAGGAGTGCTATGAGTTCATTAAACAAGAGGAAAACTTCCCCAAAGAGAGCTTGGTTCTGATTAGGGCCGATATTGCTCGGCTTCCATTTGCTTCAAGTTCTATTGATGCAGTGCATGCTGGTGCTGCTTTACATTGCTGGCCTTCACCATCAGCTGCTAATGGACTTGCAGGTGGCTGA 825 43.39 MAAIVANQTLIFVPIRLCFFKRRFFNFNSTLSIRLPTSTSTIRASSTASMEARIDPSDPVMVDKEVNNIENILACSICYGPLITAAGSGLSVESTNGYQLECGTCKKSFTGNETHLDLTIGSGINDGESMPAVTEIFRTRLVSFLYERGWRKGFSVLLGFPGPEKEFELIKDFMTPVLGGNIIDASCGSGMFSRIFAKSGLFSSIVALDYSENMLKECYEFIKQEENFPKESLVLIRADIARLPFASSSIDAVHAGAALHCWPSPSAANGLAGG 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104396934 104400389 + Tan0012526.2 Tan01g3959 741383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3959 274 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 154 267 IPR029063 -
Tan01g3959 274 PANTHER METHYLTRANSFERASE 100 267 - GO:0008168(PANTHER)|GO:0009507(PANTHER)
Tan01g3959 274 Gene3D Vaccinia Virus protein VP39 137 270 IPR029063 -
Tan01g3959 274 Pfam Methyltransferase domain 184 268 IPR013216 GO:0008757(InterPro)
Tan01g3959 274 CDD AdoMet_MTases 181 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3959 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3959 Tan-Chr1:104396934 Tan08g0356 Tan-Chr8:3158207 2.30E-57 dispersed
Tan01g3958 Tan-Chr1:104396934 Tan01g3959 Tan-Chr1:104396934 1.10E-149 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g396 . Blo12g00703 . Bda03g00494 . Bpe04g00450 . . . . . Cma09g00646 . . . Cpe06g00506 . . . . . . . . . . . . . . . Cone4ag1345 Cone7ag1586 . . Lsi04g02345 Csa03g04566 . . . . . . . . . . Sed04g0529 . Cmo09g00629 . . . Car09g00573 . . Bhi09g02609 Tan01g3959 . . Hepe01g2238 Mch11g0785 . Cla11g01496 Cam11g1552 Cec11g1584 Cco11g1580 Clacu11g1710 Cmu11g1529 Cre11g1945 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005033 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 2 1 1 1 1 6 2 1 40