Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3970 ATGGGTTCTCGAGGAAGATTACTATTTGATCTTAATGAACCCCCTGTCGAGGATAATGAAGATAGTGATGGTATTGTATTCCAGCCTCAGAAGGCCCAACCATCTTCAAATTCCCATGCTCCAGACTTATTTCCAGCATCAGGAGGTCCCCAAAGAATATTAAACAACCATGCGTTTTCTCATGCATCTTCCGTATCAGGTTTTCAGCCTTTTGTTCGGAGTAAATTTGGTTCTAATCCTGAAATGGGAGAAGAACAAAAGAAAATGTTAGATCAAAATTCAAAGATTGCTTCATCATCTAAGTTAAGTAATGTTGAGATTGCAACACCCACATTGGTTATAGGTTCTAGAGACACTCAATCAGTGGAAAGGGAAGAAGGAGAATGGTCTGATGCTGAGGGCTCTGCTGATATAAATGGAGGCAGTGTTTTGCATAAACAGTTAAAAACTTCACAAGAGCAGGGCTTACTTTCTCCTTCCCGTGATGTTTCTGAGAACAATTCCGGCAACACCAAAGTTTCTGATAGTACCATAGATAAAAGTAGTAATCATGTACCTTCAACATCGGATCCAGAGCCAAATGATCGGAAAAACAACAGTATACTAAATACAGAAAGCAATGTTGTTAAACTTGATACATCCACAGATATTGTTCAGGAAGAAACTGGGTTGCTTCCGAAACAAAGAGAAGTCAAAGGCATTGAAGCAAGTCATGCTCTAAAATGTGCTAATAACCCTGGAAAGAGGAAAATAGATCAACATCTAGAAGCCAAGCTTGGGAAGAAACGTAATAGGCAGACAATGTTTCTTAATTTAGAAGATGTGAAGCTGGCTGGGTCTATGAAAACTTCAACGCCTCGAAGGCAAACATTTCCACCTCCTATAACCACTCGCACCGTGAAGGAAGTTCATAATACAACCCAAGTTAATGAACGTGTTGGGGAAAAGCAGACTGTTAATAAAGACCAGAAACAAGGTGATGTTTCAAGTCATGAAGGAGGAGGCATTTCCTCGGAATCTGGTGAATCAAAATTGGACAGTAATGGTGATATGGGTTCTGGATTACTAGCTCGGCCAAACAGACCAAACAATGATGGAGATATCCCAGCAGAGGCACCCTTACCACCAATTCCTAGACAGGGTTCATGGAAGATGCCTACAGATTCAAGGTTGCAGAGGAATATGCAGGTCTCCAATAGAAAACCAGCTATATCTAATCAAAGTTCTTCTGACCACAAGCAGATAAATAAGAAGCATCTTCCTGCCAAGAAGCAGAACTCTGTTAGTACTCATCAAGACTCATCAGTTGAACGACTTATACGGGAGGTGACCAATGAAAAGTTTTGGCATCACCCAGAGGAAACTGAACTCCAGTGTGTTCCCGGTCGATTTGAATCTGTGGAGGAATACATCAGAGTGTTTGAACCTTTGTTATTTGAGGAATGCCGGGCTCAACTTTACAGTACGTGGGAGGAGCTCTCTGAAACATTCTCAAGAGATACACATGTGATGGTTCGTGTCAAGAATATTGAAAGGAGGGAAAGAGGATGGTATGATGTAATAGTTCTTTCTGTGAACGAGTGCAAGTGGTCATTCAAGGAGGGTGATGTGGCTGTTCTTTCATGCCCCAGACCTGGATCAGTACGATCGAAGAGGAACAACACTATGTCTATGGAGGATGATGAAGATCCTGAATCTGGTGGACGGGTGGCTGGAACGGTTCGACGACACGTTCCCGTTGACACCCGTGACCCTCAAGGGGCTATCTTGCATTTTTATGTTGGGGACTCGTATGATCCTACTAGGATTGAAGAAGATCATATACTAAGAAAATTTCAGACAAAGAATGTTTGGTTTTTAACAGTGCTCGGTTCTCTTGCAACTACCCAGCGAGAATATGTTGCCCTGCATGCATTTCGTCGGCTCAACATGCAGATGCAATCTTCAATCCTTCAGCCTAGTCCTGAGCAATTTCCGAAGTATGAGCAACAGTCACCTGCTATGCCTGAGTGTTTCACTCAAAATTTTGTTGAGTATCTGCATAGGACTTTCAACGGACCCCAGCTATCTGCAATCCAATGGGCAGCAACACATACGGCTGCTGGTACAAGCAGCGGGACAGTCAAGAGGCAAGAACCATGGCCTTTTACACTCGTGCAAGGTCCTCCTGGAACAGGTAAGACGCATACAGTTTGGGGAATGCTAAATGTTATCCATCTGGTTCAGTATCAGCATTACTATACTTCCTTGCTTAAGAAACTAGCACCAGAAAGCTATAAACAAGCTCATGAGAGCAGCTCAGATCATGTCTCTACTGGATCCATTGATGAGGTACTCCAAAACATGGACCAGAATTTTTTCCGCACTCTTCCCACACTGTGTCCTAAACCTAGAATGTTAGTCTGTGCACCTTCAAATGCTGCAACAGATGAGCTTCTTGCTCGTGTTCTTGATAGGGGGTTTATTGACGGGGAAATGAAGGTGTATCGACCTGATGTGGCTCGAGTTGGTGTTGATTCACAAACACGTGCTGCCCAAGCAGTTTCAGTAGAACGCAGAACAGAACAGCTTTTGGTCAAAAGTCGAGACGAGGTCTTAAGATGGATGCACCAGCTAAAAGTTCGTGAAACTCAATTATCACAGCAAATCAGTAATCTTCAGAGAGAACTCAATGTTGCTGCTGCTGCTGTTCGCTCTCAAGGATCTGTTGGTGTTGACCCTGATGTTCTGGTGGCTCGTGACCAAAATCGAGATGCTTTGTTGCAAAACCTTGCTGCTGTAATAGAAGGTAGGGATAAAATTCTAGTTGAGATGTCACGTCTCCTTATTATAGAAGGCAGGTTTCGAGCTAACTGCAGTTTCAATCTGGAGGATGCACGAGCTAGTCTTGAGGCTAGTTTTGCCAACGAGGCTGAGATAGTTTTCACTACAGTATCAAGCAGTGGTCGCAAATTGTTTTCTCGACTTTCTCATGGTTTTGACATGGTAGTCATTGATGAGGCCGCCCAAGCCAGTGAGGTAGCTGTTCTTCCACCGCTTTCTCTTGGTGCAGCAAGGTGTGTGCTTGTTGGAGATCCCCAGCAGCTCCCAGCCACAGTTATCAGTAAAGCAGCAGGAACATTGTTGTACAGTAGAAGTCTCTTTGAAAGATTCCAGCAAGCAGGATGTCCCACCATGTTGTTATCGGTGCAGTATAGAATGCATCCTCAAATACGTGATTTCCCTTCAAGGTACTTCTACCAAGGACGCCTTACTGACAGTGAAAGTGTTGCTAATTTACCCGATGAGGCATACTACAAAGACCCTTTACTTAGACCTTACACTTTCTTTGATATTACGCACGGGCGGGAATCTCATAGAGGGGGATCTGTTTCATACCAAAATATTCACGAAGCACAATTCTGTCTTCGTATGTATGAACATCTACAGAAAACCGTGAAGTCATTAGGCATAGGTAAAGTTTCAGTTGGTATAATAACACCATACAAGCTCCAATTGAAGTGCCTCCAACGTGAGTTTGAGGAGGTTCTGAACTCTGAAGAAGGGAAGGATCTATATATTAACACTGTAGATGCCTTCCAAGGTCAAGAAAGGGATGTGATTATCATGTCTTGTGTGCGTGCCTCCAACCATGGCGTTGGTTTTGTTGCAGATATTCGTCGAATGAATGTAGCACTGACCCGTGCAAGAAGGGCTCTTTGGGTAATGGGCAATGCTAATGCTTTGACGCAGTCTGATGATTGGGCTGCGTTGATCACTGATGCAAAGTCAAGGAATTGTTACATGGATATGGAATCTCTTCCCAAGGACTTCGTCGGACAGAAGGGATCTACTCAATCTACTTTGCCAGGGAAGAACTCTTCCAACATTAGGGGTCTGAGATCAGCTCTTCCAAGACATAGGACTCTAGATATACACGTGGAGTCAAGGTCTGGAACACCATCGGAAGATGATGAGAAATCAAACTCTTCGGTAATTACGAGGAATGGAAATTACCGGCCTTCTAAGGCTGCTATAGAAACTTCCCCAGAAGACTTCGATCAGTCAGGTGACAAATTGAGAGATACTTGGCAATATGGTATGCAGAAAAGGCAAGGTTCTGCTGGGACAGTTGGGAAGAGAGAGATTTAA 4131 43.57 MGSRGRLLFDLNEPPVEDNEDSDGIVFQPQKAQPSSNSHAPDLFPASGGPQRILNNHAFSHASSVSGFQPFVRSKFGSNPEMGEEQKKMLDQNSKIASSSKLSNVEIATPTLVIGSRDTQSVEREEGEWSDAEGSADINGGSVLHKQLKTSQEQGLLSPSRDVSENNSGNTKVSDSTIDKSSNHVPSTSDPEPNDRKNNSILNTESNVVKLDTSTDIVQEETGLLPKQREVKGIEASHALKCANNPGKRKIDQHLEAKLGKKRNRQTMFLNLEDVKLAGSMKTSTPRRQTFPPPITTRTVKEVHNTTQVNERVGEKQTVNKDQKQGDVSSHEGGGISSESGESKLDSNGDMGSGLLARPNRPNNDGDIPAEAPLPPIPRQGSWKMPTDSRLQRNMQVSNRKPAISNQSSSDHKQINKKHLPAKKQNSVSTHQDSSVERLIREVTNEKFWHHPEETELQCVPGRFESVEEYIRVFEPLLFEECRAQLYSTWEELSETFSRDTHVMVRVKNIERRERGWYDVIVLSVNECKWSFKEGDVAVLSCPRPGSVRSKRNNTMSMEDDEDPESGGRVAGTVRRHVPVDTRDPQGAILHFYVGDSYDPTRIEEDHILRKFQTKNVWFLTVLGSLATTQREYVALHAFRRLNMQMQSSILQPSPEQFPKYEQQSPAMPECFTQNFVEYLHRTFNGPQLSAIQWAATHTAAGTSSGTVKRQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPESYKQAHESSSDHVSTGSIDEVLQNMDQNFFRTLPTLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSRDEVLRWMHQLKVRETQLSQQISNLQRELNVAAAAVRSQGSVGVDPDVLVARDQNRDALLQNLAAVIEGRDKILVEMSRLLIIEGRFRANCSFNLEDARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVANLPDEAYYKDPLLRPYTFFDITHGRESHRGGSVSYQNIHEAQFCLRMYEHLQKTVKSLGIGKVSVGIITPYKLQLKCLQREFEEVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNANALTQSDDWAALITDAKSRNCYMDMESLPKDFVGQKGSTQSTLPGKNSSNIRGLRSALPRHRTLDIHVESRSGTPSEDDEKSNSSVITRNGNYRPSKAAIETSPEDFDQSGDKLRDTWQYGMQKRQGSAGTVGKREI 1376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104504498 104514155 - Tan0020671.1 Tan01g3970 741394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3970 1376 MobiDBLite consensus disorder prediction 282 314 - -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 385 411 - -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 1302 1323 - -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 330 347 - -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 554 570 - -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 144 207 - -
Tan01g3970 1376 Gene3D - 607 1064 IPR027417 -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 281 436 - -
Tan01g3970 1376 Coils Coil 869 896 - -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 26 42 - -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 1 51 - -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 73 207 - -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 1302 1376 - -
Tan01g3970 1376 FunFam P-loop containing nucleoside triphosphate hydrolase 1065 1271 - -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 1272 1291 - -
Tan01g3970 1376 CDD SF1_C_Upf1 1067 1256 IPR047187 -
Tan01g3970 1376 Pfam AAA domain 689 1036 IPR041677 GO:0004386(InterPro)
Tan01g3970 1376 CDD DEXXQc_SETX 684 1066 - -
Tan01g3970 1376 Gene3D - 1065 1271 IPR027417 -
Tan01g3970 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 714 1268 IPR027417 -
Tan01g3970 1376 Pfam AAA domain 1043 1239 IPR041679 -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 92 118 - -
Tan01g3970 1376 MobiDBLite consensus disorder prediction 549 570 - -
Tan01g3970 1376 PANTHER DNA2/NAM7 HELICASE FAMILY 358 1371 IPR045055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3970 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3970 Tan-Chr1:104504498 Tan06g0010 Tan-Chr6:312948 1.20E-88 dispersed
Tan01g3970 Tan-Chr1:104504498 Tan04g1711 Tan-Chr4:39078478 4.70E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37