Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g3972 | ATGGCAGCTGCCATGGATTTCTATCATGAAGGACCTCGAACAGACCACTTTGGCGGTGAACTAATGGAAGCAATTATACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTACAAATTTCCCTTCTTCTTCTTCTTCTTCTTCTTCACCAACTCCTTCTTTTCCTTCTTCCTTCAACAGCCACCTGAACTTCTCTCACTCAGTCTCTCAACAGTCCACTTTATACTCAAATGGCTGCTCCACTTCGATGAACCCAGTATTTTCAGATGGGTTCTCGACTCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCCCATCATTTATCACCACCTCAAATTCTCCATTCTAAACCTCAGATCAATCTTCTTCAAAACCAGACCCCAGTAGCTTTTGCTTGGGGCCAACAGAACCAACAGCCACATCAACCGCCACTGTGCTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCGATCCCAATGAAGCAAGTGGGTTCATCTTCAAAACCCACCAAGCTTTACAGAGGGGTAAGACAACGGCATTGGGGGAAGTGGGTGGCTGAGATTCGACTACCAAGGAACCGAACTCGACTCTGGCTCGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCCAGACTCAATTTCCCCAACCTCAAGCACCAAGGCTCCTGTGTTGAAGGCGAATTCGGCCAATATAGGCCTCTACATTCCTCAGTTGATGCAAAGCTCCAAGCAATTTGTGATAACTTGGCCAAGCCACAGAAACAAGGCAACTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATTCTGCTCCACGGTGGCAGAAACAGCGGCTGTGAAGGTGGAGAACTCCTCGTCGCTGGCTGTCACAGAGAGCGACGGGTCTGCAGCGTCTTCACCTTTATCAGATCATACATTCCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCTGAGATAGATTGGGCATCGATCTTACCTTAA | 1083 | 47.74 | MAAAMDFYHEGPRTDHFGGELMEAIIPFIKVASSSASTNFPSSSSSSSSPTPSFPSSFNSHLNFSHSVSQQSTLYSNGCSTSMNPVFSDGFSTQNLIGFEQPFTIGPHHLSPPQILHSKPQINLLQNQTPVAFAWGQQNQQPHQPPLCYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGQYRPLHSSVDAKLQAICDNLAKPQKQGNSKKPVTAAKKSRSQFCSTVAETAAVKVENSSSLAVTESDGSAASSPLSDHTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 104567229 | 104569322 | + | Tan0018769.1 | Tan01g3972 | 741396 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g3972 | 360 | CDD | AP2 | 175 | 235 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3972 | 360 | PRINTS | Ethylene responsive element binding protein signature | 177 | 188 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3972 | 360 | PRINTS | Ethylene responsive element binding protein signature | 199 | 215 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3972 | 360 | SUPERFAMILY | DNA-binding domain | 176 | 233 | IPR016177 | GO:0003677(InterPro) | |
Tan01g3972 | 360 | ProSiteProfiles | AP2/ERF domain profile. | 176 | 233 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3972 | 360 | Gene3D | AP2/ERF domain | 176 | 234 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3972 | 360 | FunFam | Ethylene-responsive transcription factor 2 | 175 | 234 | - | - | |
Tan01g3972 | 360 | SMART | rav1_2 | 176 | 239 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3972 | 360 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 17 | 358 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Tan01g3972 | 360 | Pfam | AP2 domain | 176 | 225 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1097 | Tan-Chr1:10812417 | Tan01g3972 | Tan-Chr1:104567229 | 3.30E-31 | dispersed | |
Tan01g3972 | Tan-Chr1:104567229 | Tan03g1886 | Tan-Chr3:74213822 | 2.00E-64 | dispersed | |
Tan01g3972 | Tan-Chr1:104567229 | Tan02g2374 | Tan-Chr2:92380634 | 3.10E-86 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26534 | PF00847 | AP2 | 2.70E-15 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g3972 | K09286 | - | csv:101214560 | 580.867 |