Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3972 ATGGCAGCTGCCATGGATTTCTATCATGAAGGACCTCGAACAGACCACTTTGGCGGTGAACTAATGGAAGCAATTATACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTACAAATTTCCCTTCTTCTTCTTCTTCTTCTTCTTCACCAACTCCTTCTTTTCCTTCTTCCTTCAACAGCCACCTGAACTTCTCTCACTCAGTCTCTCAACAGTCCACTTTATACTCAAATGGCTGCTCCACTTCGATGAACCCAGTATTTTCAGATGGGTTCTCGACTCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCCCATCATTTATCACCACCTCAAATTCTCCATTCTAAACCTCAGATCAATCTTCTTCAAAACCAGACCCCAGTAGCTTTTGCTTGGGGCCAACAGAACCAACAGCCACATCAACCGCCACTGTGCTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCGATCCCAATGAAGCAAGTGGGTTCATCTTCAAAACCCACCAAGCTTTACAGAGGGGTAAGACAACGGCATTGGGGGAAGTGGGTGGCTGAGATTCGACTACCAAGGAACCGAACTCGACTCTGGCTCGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCCAGACTCAATTTCCCCAACCTCAAGCACCAAGGCTCCTGTGTTGAAGGCGAATTCGGCCAATATAGGCCTCTACATTCCTCAGTTGATGCAAAGCTCCAAGCAATTTGTGATAACTTGGCCAAGCCACAGAAACAAGGCAACTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATTCTGCTCCACGGTGGCAGAAACAGCGGCTGTGAAGGTGGAGAACTCCTCGTCGCTGGCTGTCACAGAGAGCGACGGGTCTGCAGCGTCTTCACCTTTATCAGATCATACATTCCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCTGAGATAGATTGGGCATCGATCTTACCTTAA 1083 47.74 MAAAMDFYHEGPRTDHFGGELMEAIIPFIKVASSSASTNFPSSSSSSSSPTPSFPSSFNSHLNFSHSVSQQSTLYSNGCSTSMNPVFSDGFSTQNLIGFEQPFTIGPHHLSPPQILHSKPQINLLQNQTPVAFAWGQQNQQPHQPPLCYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGQYRPLHSSVDAKLQAICDNLAKPQKQGNSKKPVTAAKKSRSQFCSTVAETAAVKVENSSSLAVTESDGSAASSPLSDHTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104567229 104569322 + Tan0018769.1 Tan01g3972 741396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3972 360 CDD AP2 175 235 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3972 360 PRINTS Ethylene responsive element binding protein signature 177 188 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3972 360 PRINTS Ethylene responsive element binding protein signature 199 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3972 360 SUPERFAMILY DNA-binding domain 176 233 IPR016177 GO:0003677(InterPro)
Tan01g3972 360 ProSiteProfiles AP2/ERF domain profile. 176 233 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3972 360 Gene3D AP2/ERF domain 176 234 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3972 360 FunFam Ethylene-responsive transcription factor 2 175 234 - -
Tan01g3972 360 SMART rav1_2 176 239 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3972 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 17 358 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Tan01g3972 360 Pfam AP2 domain 176 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1097 Tan-Chr1:10812417 Tan01g3972 Tan-Chr1:104567229 3.30E-31 dispersed
Tan01g3972 Tan-Chr1:104567229 Tan03g1886 Tan-Chr3:74213822 2.00E-64 dispersed
Tan01g3972 Tan-Chr1:104567229 Tan02g2374 Tan-Chr2:92380634 3.10E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26534 PF00847 AP2 2.70E-15 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3972 K09286 - csv:101214560 580.867