Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3984 ATGGCGACTTCAGTCCACAATAATCGCCAATTTCCTCGTTTAGATTCCGCGTTGAATGGCGGCGGCATTGTCACTTTCAAAACCGCTTCCAATTCGCCGGACGACGAGGAATTCTCCAGTGACGACGAGAACGAGTACGATTTCACCGATTTGATTCGAAAAGGAAAGAGCGAATTGGAGCCTTCGATTCTCGACGCTAGGGATTTCGGGACTGCCGATAACTGGATCGAGCGAAACGAGTCGATGATTCGTCTTACGGGTAAACATCCGTTCAATTCGGAGCCTCCGTTGGTCCATTTGATGCACCATGGGTTCATAACTCCGGTTCCGCTCCATTACGTTCGTAACCACGGTCCAGTCCCCAAGGCAGAGTGGGAGGATTGGACCGTCGAGGTTTGCGGTCTAGTGAAAAAACCGACCCGATTCACCATGGACCAACTCGTAAACGAGTTTCGCAGCCGGGAGTTTCCAGTGACGCTCGTCTGCGCCGGAAACCGCCGTAAGGAGCAGAATATGGTGAAAAAAACCATCGGATTCAACTGGGGCGCTGCCGGGATCTCCACGTCGGTCTGGCAGGGGGTCCCATTGCGAGACGTTTTAAGACGATGTGGCATATTCAGCAGTAAAAAGGGGGCTCTCAATGTTTGCTTTGAAGGAGCCGAGTGCTTACCTGGCGGCGGTGGGTCCAAGTACGGGACTAGCATCAGAAAGGAAATAGCCATGGATTCGGGTAGAGATATAATCTTAGCCTATATGCAAAACGGGGACGTCTTGGCACCGGATCACGGGTTTCCGGTGCGGGTCATCACGCCCGGATTCATCGGTGGGCGGATGGTGAAATGGCTCAACCGCATTATAGTGACCACACAAGAATCTGATAGCTATTATCATTATAGAGACAACAAAGTCCTTCCTTCCCATGTCGATGCCGAATTGGCAAACGCAGAAGCTTGGTGGTACAAGCCAGAATGTATTATAAGCGAGTTAAACATAAACTCGGTGATAACGACGCCATGTCACGAGGAAATATTGCCGATAAATTCATGGACGACACAACGGGCGTACACGTTGAGGGGTTATGCATATTCCGGAGGGGGGAAGAAAGTGACACGTGTGGAGGTGAGTATGGATGGAGGGGAGTCGTGGCACGTGTGTGATTTAGAGCGACCTGAAAAGGCAACAAAATATGGCAAGTATTGGTGTTGGTGTTTTTGGTCACTGGAAATTGAGGTGCTTGATCTGCTTGCGGCTAAGGAAATTGCAGTTCGGGCTTGGGATCAAACCTTCAACACTCAACCTGAGAAGCTCATTTGGAATCTCATGGGAATGATGAACAATTGCTGGTTTCGAGTGAAAACCAACATGTGCAAACCTCATAAAGGAGAGATCGGAATCGTCTTCGAACACCCAACTTTGCCCGGCAACCAATCCGGCGGATGGATGGCCAAAGAGAGACATCTCGAAATATCAACAGAAACCAATCAAACCATGAAGAAAAGTGTCTCATCCCCCTTCATCAACACCGCTTCAAAGACATACTCTATGTCCGATGTCAAAAGACACAACTCAGATCAATCCGCATGGATCGTCGTCCACGGCCATGTGTACGACTGCACCTCCTTCCTCAAGGAGCATCCCGGCGGCGCCGATAGCATTCTCATCAATGCCGGTACCGACTGCACCGAGGAGTTCGACGCTATCCACTCCGACAAAGCCAAGAAAATGCTCGAGGAATACCGAATCGGCGAGTTCATCATCTCCTCCTCTTCCTCTTCCTCTTATGAGCTACCTCCAATTACAGAGACGATTGCCCCACTTAGGCGCGTGGCTCTAGTCCCGCGTGAAAAAATTCCCTGCAAACTAATTTCCAAAACGTCAATCTCACACGACGTCAGACGGTTCAGATTCGCCTTGCCGTTAGAAGATCAAGTCCTTGGATTACCAGTGGGCAAACACATTTTCCTCTGCGTAAACATAGACGGCAAGCTTTGCATGCGAGCGTACACCCCAACGAGCGGCGTCGATCAACTGGGCCATTTCGATCTAGTGGTAAAAATCTACTCCAAAAACACCCACCCAAAATTCCCCAACGGCGGGCTCATGTCGCAACATCTGGATTCACTCCCACTCGGATCAGAGCTGAAATTGAAAGGTCCGTTGGGTCACATCGAATACACCGGCCGGGGAAACTTTATGGTCGACGGGAAGCTCAAGAAGGCGAAGAAGCTGGCAATGTTGGCCGGAGGAACAGGGATTACGCCGATATATCAAGTGGCGCAGGCGGTTTTGAAGGATCCTGAGGATGAAACAGAGATGTTTGTGGTGTACGCCAATAGAACGGAGAATGATATTTTGGTAAGGGAAGAGTTGGATGAATGGGCGAAGAGTGATAAAAGATTCAAAGTGTGGTATGTTGTGCAAGAGAGTGTAAGGGAAGGAGGGTGGGAATTCAGTGTGGGCGTGATCACAGAGAGTATCATGAGGGAGCATCTTCCCGAAGCTTCGATGGACACGTTGGCGTTGGCTTGTGGACCTCCACCGATGATTAAGTTGGTTGTGCAACCTAACTTGGAGAAGATGAACTATGATATTGCTAATTCCTTGTTAGTGTTTTAA 2616 49.62 MATSVHNNRQFPRLDSALNGGGIVTFKTASNSPDDEEFSSDDENEYDFTDLIRKGKSELEPSILDARDFGTADNWIERNESMIRLTGKHPFNSEPPLVHLMHHGFITPVPLHYVRNHGPVPKAEWEDWTVEVCGLVKKPTRFTMDQLVNEFRSREFPVTLVCAGNRRKEQNMVKKTIGFNWGAAGISTSVWQGVPLRDVLRRCGIFSSKKGALNVCFEGAECLPGGGGSKYGTSIRKEIAMDSGRDIILAYMQNGDVLAPDHGFPVRVITPGFIGGRMVKWLNRIIVTTQESDSYYHYRDNKVLPSHVDAELANAEAWWYKPECIISELNINSVITTPCHEEILPINSWTTQRAYTLRGYAYSGGGKKVTRVEVSMDGGESWHVCDLERPEKATKYGKYWCWCFWSLEIEVLDLLAAKEIAVRAWDQTFNTQPEKLIWNLMGMMNNCWFRVKTNMCKPHKGEIGIVFEHPTLPGNQSGGWMAKERHLEISTETNQTMKKSVSSPFINTASKTYSMSDVKRHNSDQSAWIVVHGHVYDCTSFLKEHPGGADSILINAGTDCTEEFDAIHSDKAKKMLEEYRIGEFIISSSSSSSYELPPITETIAPLRRVALVPREKIPCKLISKTSISHDVRRFRFALPLEDQVLGLPVGKHIFLCVNIDGKLCMRAYTPTSGVDQLGHFDLVVKIYSKNTHPKFPNGGLMSQHLDSLPLGSELKLKGPLGHIEYTGRGNFMVDGKLKKAKKLAMLAGGTGITPIYQVAQAVLKDPEDETEMFVVYANRTENDILVREELDEWAKSDKRFKVWYVVQESVREGGWEFSVGVITESIMREHLPEASMDTLALACGPPPMIKLVVQPNLEKMNYDIANSLLVF 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104649703 104653741 + Tan0000932.1 Tan01g3984 741408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3984 871 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 541 548 IPR018506 GO:0020037(InterPro)
Tan01g3984 871 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 715 865 IPR039261 -
Tan01g3984 871 Gene3D - 67 318 IPR036374 -
Tan01g3984 871 Gene3D Translation factors 607 720 - -
Tan01g3984 871 SUPERFAMILY E set domains 328 453 IPR014756 -
Tan01g3984 871 Pfam Cytochrome b5-like Heme/Steroid binding domain 515 584 IPR001199 -
Tan01g3984 871 Gene3D - 508 593 IPR036400 -
Tan01g3984 871 CDD eukary_NR_Moco 68 453 - -
Tan01g3984 871 CDD cyt_b5_reduct_like 619 866 - -
Tan01g3984 871 FunFam Nitrate reductase 328 504 - -
Tan01g3984 871 FunFam NADH-cytochrome b5 reductase 606 720 - -
Tan01g3984 871 PIRSF Nitr_rd_NADH 3 870 IPR012137 GO:0006809(InterPro)|GO:0042128(InterPro)|GO:0050464(InterPro)
Tan01g3984 871 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 510 585 IPR001199 -
Tan01g3984 871 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 134 169 IPR022407 GO:0043546(InterPro)
Tan01g3984 871 Gene3D - 721 871 IPR039261 -
Tan01g3984 871 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 839 847 IPR001709 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 544 554 IPR001709 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 782 793 IPR001709 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 666 673 IPR001709 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 744 763 IPR001709 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 770 779 IPR001709 GO:0016491(InterPro)
Tan01g3984 871 Pfam Mo-co oxidoreductase dimerisation domain 325 454 IPR005066 GO:0016491(InterPro)|GO:0030151(InterPro)
Tan01g3984 871 MobiDBLite consensus disorder prediction 25 44 - -
Tan01g3984 871 Pfam Oxidoreductase molybdopterin binding domain 117 296 IPR000572 -
Tan01g3984 871 PANTHER SULFITE REDUCTASE 54 458 - GO:0006790(PANTHER)|GO:0008482(PANTHER)|GO:0020037(PANTHER)|GO:0043546(PANTHER)
Tan01g3984 871 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 509 586 IPR036400 -
Tan01g3984 871 FunFam Nitrate reductase 69 318 - -
Tan01g3984 871 Gene3D - 328 504 - -
Tan01g3984 871 Pfam Oxidoreductase NAD-binding domain 745 853 IPR001433 GO:0016491(InterPro)
Tan01g3984 871 SUPERFAMILY Riboflavin synthase domain-like 608 726 IPR017938 -
Tan01g3984 871 FunFam Sulfite oxidase, mitochondrial 508 588 - -
Tan01g3984 871 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 65 326 IPR036374 -
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 242 258 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 105 121 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 83 97 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 436 449 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 259 272 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 169 181 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 275 288 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 326 338 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 158 169 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 357 371 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 398 408 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 371 383 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 184 199 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Eukaryotic molybdopterin domain signature 423 435 IPR008335 GO:0016491(InterPro)
Tan01g3984 871 PRINTS Cytochrome B5 reductase signature 645 656 - -
Tan01g3984 871 PRINTS Cytochrome B5 reductase signature 744 763 - -
Tan01g3984 871 PRINTS Cytochrome B5 reductase signature 839 847 - -
Tan01g3984 871 PRINTS Cytochrome B5 reductase signature 711 725 - -
Tan01g3984 871 PRINTS Cytochrome B5 reductase signature 782 793 - -
Tan01g3984 871 PRINTS Cytochrome B5 reductase signature 666 673 - -
Tan01g3984 871 PRINTS Cytochrome B5 signature 572 584 IPR001199 -
Tan01g3984 871 PRINTS Cytochrome B5 signature 560 567 IPR001199 -
Tan01g3984 871 PRINTS Cytochrome B5 signature 535 545 IPR001199 -
Tan01g3984 871 PRINTS Cytochrome B5 signature 545 559 IPR001199 -
Tan01g3984 871 FunFam Nitrate reductase [NADH] 721 871 - -
Tan01g3984 871 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 614 726 IPR017927 GO:0016491(InterPro)
Tan01g3984 871 Pfam Oxidoreductase FAD-binding domain 619 725 IPR008333 -
Tan01g3984 871 SMART Cyt_b5_2 513 585 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3984 K10534 - - csv:101216001 1489.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3984 Tan-Chr1:104649703 Tan11g1336 Tan-Chr11:11606775 0.00E+00 dispersed
Tan08g1234 Tan-Chr8:34995638 Tan01g3984 Tan-Chr1:104649703 3.30E-27 transposed
Tan11g0154 Tan-Chr11:1421014 Tan01g3984 Tan-Chr1:104649703 6.70E-50 transposed
Tan11g0184 Tan-Chr11:1569619 Tan01g3984 Tan-Chr1:104649703 1.40E-50 transposed
Tan01g3984 Tan-Chr1:104649703 Tan11g1335 Tan-Chr11:11537175 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90