Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3993 ATGGGGTTGAATAGTAGTAGTAGTCTTGAAGATCATGCAGAATCGAAAGAAGAATGTTTTCATGTTTTGGCAGTGGATGATAACCTCATTGATAGAAAGCTGCTCGAAAGGCTTCTCAAAAGTTCTTCCTACCATGTGACCTGCGTAGAATCTGGAGACAAAGCTTTGAAATATTTGGGAGTGTATGATGAATGCTCATCGGAGAAGAGCAGCCATTGTTATGGATCTGCTAATTACAGTTCTTCTTCATCACCTTCTTCACCCCTACAACAGGAAACATTGAAAGTCAACTTAATCATGACAGACTTTTCAATGCCTGGAATGAGCGGTTATGATTTACTCACGCGTCTCAAGAAATCACGTTGGAAAGATGTGCCAGTAGTGGTGATGTCATCTGAAAATGTACCTTCAAGAATCAACATGTGCTTAGAAGGAGGCGCCAAGGAATTCCTTTTGAAGCCTCTTCAACTATCCGATTTGGATAAGATTCACCTTCATCTTCTCAAGTCCTCTCGTCGAGAATTCACGAACATTGCACAAAATTTCAATGTAAACATTACCAACAGTGACAATATTGCTAGCCATGAAAAAAGTCATTGTCTCTTCATCTCCCCAACCTTTTGA 624 40.06 MGLNSSSSLEDHAESKEECFHVLAVDDNLIDRKLLERLLKSSSYHVTCVESGDKALKYLGVYDECSSEKSSHCYGSANYSSSSSPSSPLQQETLKVNLIMTDFSMPGMSGYDLLTRLKKSRWKDVPVVVMSSENVPSRINMCLEGGAKEFLLKPLQLSDLDKIHLHLLKSSRREFTNIAQNFNVNITNSDNIASHEKSHCLFISPTF 207
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 104864493 104867769 - Tan0015885.1 Tan01g3993 741417
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3993 207 Gene3D - 21 197 - -
Tan01g3993 207 SMART REC_2 20 164 IPR001789 GO:0000160(InterPro)
Tan01g3993 207 Pfam Response regulator receiver domain 92 162 IPR001789 GO:0000160(InterPro)
Tan01g3993 207 SUPERFAMILY CheY-like 21 194 IPR011006 -
Tan01g3993 207 ProSiteProfiles Response regulatory domain profile. 21 168 IPR001789 GO:0000160(InterPro)
Tan01g3993 207 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 188 IPR045279 GO:0009736(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3993 Tan-Chr1:104864493 Tan11g1266 Tan-Chr11:10792753 1.50E-48 dispersed
Tan01g3993 Tan-Chr1:104864493 Tan09g2194 Tan-Chr9:71968697 2.00E-32 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26536 PF00072 Response_reg 9.10E-15 CL0304 Tan TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3993 K14492 - vvi:100259216 207.994