Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g3993 | ATGGGGTTGAATAGTAGTAGTAGTCTTGAAGATCATGCAGAATCGAAAGAAGAATGTTTTCATGTTTTGGCAGTGGATGATAACCTCATTGATAGAAAGCTGCTCGAAAGGCTTCTCAAAAGTTCTTCCTACCATGTGACCTGCGTAGAATCTGGAGACAAAGCTTTGAAATATTTGGGAGTGTATGATGAATGCTCATCGGAGAAGAGCAGCCATTGTTATGGATCTGCTAATTACAGTTCTTCTTCATCACCTTCTTCACCCCTACAACAGGAAACATTGAAAGTCAACTTAATCATGACAGACTTTTCAATGCCTGGAATGAGCGGTTATGATTTACTCACGCGTCTCAAGAAATCACGTTGGAAAGATGTGCCAGTAGTGGTGATGTCATCTGAAAATGTACCTTCAAGAATCAACATGTGCTTAGAAGGAGGCGCCAAGGAATTCCTTTTGAAGCCTCTTCAACTATCCGATTTGGATAAGATTCACCTTCATCTTCTCAAGTCCTCTCGTCGAGAATTCACGAACATTGCACAAAATTTCAATGTAAACATTACCAACAGTGACAATATTGCTAGCCATGAAAAAAGTCATTGTCTCTTCATCTCCCCAACCTTTTGA | 624 | 40.06 | MGLNSSSSLEDHAESKEECFHVLAVDDNLIDRKLLERLLKSSSYHVTCVESGDKALKYLGVYDECSSEKSSHCYGSANYSSSSSPSSPLQQETLKVNLIMTDFSMPGMSGYDLLTRLKKSRWKDVPVVVMSSENVPSRINMCLEGGAKEFLLKPLQLSDLDKIHLHLLKSSRREFTNIAQNFNVNITNSDNIASHEKSHCLFISPTF | 207 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 104864493 | 104867769 | - | Tan0015885.1 | Tan01g3993 | 741417 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g3993 | 207 | Gene3D | - | 21 | 197 | - | - | |
| Tan01g3993 | 207 | SMART | REC_2 | 20 | 164 | IPR001789 | GO:0000160(InterPro) | |
| Tan01g3993 | 207 | Pfam | Response regulator receiver domain | 92 | 162 | IPR001789 | GO:0000160(InterPro) | |
| Tan01g3993 | 207 | SUPERFAMILY | CheY-like | 21 | 194 | IPR011006 | - | |
| Tan01g3993 | 207 | ProSiteProfiles | Response regulatory domain profile. | 21 | 168 | IPR001789 | GO:0000160(InterPro) | |
| Tan01g3993 | 207 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 14 | 188 | IPR045279 | GO:0009736(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g3993 | Tan-Chr1:104864493 | Tan11g1266 | Tan-Chr11:10792753 | 1.50E-48 | dispersed | |
| Tan01g3993 | Tan-Chr1:104864493 | Tan09g2194 | Tan-Chr9:71968697 | 2.00E-32 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 26536 | PF00072 | Response_reg | 9.10E-15 | CL0304 | Tan | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g3993 | K14492 | - | vvi:100259216 | 207.994 |