Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4039 ATGGGCTGTGGAGGATCCAAGGTGGACGAGCTTCAATTGGTGACTCTTTGCAGAGAGAGGAAGGAGTTAATCAAAGCCGCCTCTCGCCATCGTTACGCTCTTGCTGCAGCTCACGTTACGTATTTTCAGTCTCTCAAAGACATTGGCGAAGCTATACGCAAATTTGTTGACGAAGAGATTGTGATCTCTGGTGCTGATTCTTCATCCTCCCATGGCTCTCCTGTTCTTACACTGCCATCTGATGAAGGGAAAGGGAAGAGGAGGAAGTCAAAATCGGGTGAGAAACACATACACTCGTCTTCGTCGTCCTCGATTTTGCATTCTGTTTCGATTTCACATGAACCCTCTCCTGACGAGGACGAGATCGATGGCTCTCACTTGCATTTATCATCTGGATCGGATTCTGATTCTGAACACAACTCTTCGGGCCATATTCACATTGAAGATAGTCCAGTAGCAGATGGAGGCTATAGCCATCCTCCTCCTTATGCATATCCGCCAGATTGGAGTTCTCCAACGAATACATACGCCTATTATATGCAGAGGTCAACCACTCCGGCGACAACAGTAATGTATGATGGGCCGGAAACACATACAGCTTCAGATGGGCAGTGGCCTGAACCCTCGTACAGTTATCCTCCATATCCGCAGTATGGAAATGGAGGGTTCTATGGGTTTTCAATGAGTTCCCAACCGGATTATAACCAGTATAATCAGCAACCGAGGCGGCCCGCTACTCCACCACCTCCACCTTCTCCGCCGCAGGTTTCTGCTTGGGATTTTATGAATGTTTTTGATGGCTATGATAATGGTTACCAGGATTATAATTCGGGGAATAGATATGGGTATGGTTCCATTCAGAGCAGTCCTGATTCCAATGAAGTGAGGGAGAGAGAAGGGATACCTGAGTTGGAATATGAAACAGAGCCCGAAGCTCTGAAAGAAATTAAAGAGAGGAAGAAATTGAATGTGGAGACTATGAATAAGAATATGAATTCAGGGGAGGGGACCTCAAAGTTTGTTCCGCCTCAGAGTAGTGAGGACAATTCAAAATCAGTGCCATTGCCAAATAGTGGTAGCTCCACGGTATCAAAGGAAAAGGGAATGATTAACAGTCCTGATACAATTGTGTCGAAAAAATCAGAACAGGAGGAGCCAGAGGAGAAGAAAGAGGTGAGTTTTGAGATTGAGGAGACTTCAACATTAGATGTTGAATCCTCCAAGAAAAGTAATTTAGCCACATTCACTGCCTATGGTACAAGGGACCTTCAGGAAGTTGTAAATGAAATTAAGGATGAATTTGAAGCTGCTTCTAGCTATGGGAAAGAGGTCGCAATGTTGCTTGAAGTGGGGAAATTGCCTTATCGGTCTAAGATCACTGTACTTAAAGTTATTCTTTCTCGGATCCAGTACTTGGTGGCCCCTTCCTCAGCATCATCTCAGCCGCCATTGATTTTGTTGGACCCTAAGACAGTGAAAATGGCAAAAGCATACTCCGGGGTTGGCAGTCCTGGCAATGAGTTTGACTTGAAATCTGGAAGCCTTTCATCAACGCTGGAGAAGCTTTATGTATGGGAGAAGAAACTGTATAAAGAAGTTAAGGATGAAGAAAGGTTGCGTGTTATTTATGAAAAACTGTGCAAGAAGTTGAAAAGGTTAGATGACCATGGAGCTGATTCCACTAAAATTGATGCTACTCATGCCTCTATTAGAAAATTGTTGACCAAGATCGACATATGTATCAAAGCGGCTGATGCTATATCAAGCAGGATACATAAGTTACGGGATGAAGAATTGCAGCCTCAGTTAACTGAGCTGATTCATGGGTGGATAAAAATGTGGAGCTCTATTCTCAAATGCCACCAGAAACAATTTCAAGCAGTTATGGAGAGCAAGATTCGCTCATTAAAAGCTAGAACTGGATCTAGAAGAGATGAGAGTTTGAAAGCTACTGTGGATCTTGAAATGGAACTTGTCAATTGGTGCGCCAGATTTAACAATTGGATTCGCACCCAAAAAGCTTATGTTGAATCATTAAATGGATGGCTCCTACGATGCCTTAACAACGAGCCTGAAGAAACTGCTGATGGAGTTGCTCCTTTTTCACCCGGTAGGATGGGAGCTCCACCGATTTTTATCATTTGCAACGATTGGCACCAAGCTATGCTTGAAATTTCAGAAGATAAGGTGGTAGGTGCCATTCATGGTTTTGCTTTGAACTTGCATGAGTTATGGGAAAGGCAAGATGAGGAACAACGTCAGAGAATCAAAGCTAATTTCCTTTACAAGGATTTTGAAGAACACCTTAGAACCTTAAAAATGGAGAGGGCAATGTTAAAACCTGACCAAGATGAGGCATCAGGAAGAACTGTGCTCTCAAAATTTCCTTCTGAAAGTGGAGTTTTACCACCGGATGATCTGAAAGTTAACTTGGATTCACTGAGAAAGAAGTTATACGACGAGAGAGCAAAACACAAGGATGCCATTAAGCTGGTCCACAATGCTGCTTCAAATAGCATACAGGCTGGCTTGGTTCCAATCTTTGAGGCTTTGGAAAAATTCAGTTCTGAGGTCATGAAAGCTCACGAGCAAGTCAGGCTTTAA 2604 43.39 MGCGGSKVDELQLVTLCRERKELIKAASRHRYALAAAHVTYFQSLKDIGEAIRKFVDEEIVISGADSSSSHGSPVLTLPSDEGKGKRRKSKSGEKHIHSSSSSSILHSVSISHEPSPDEDEIDGSHLHLSSGSDSDSEHNSSGHIHIEDSPVADGGYSHPPPYAYPPDWSSPTNTYAYYMQRSTTPATTVMYDGPETHTASDGQWPEPSYSYPPYPQYGNGGFYGFSMSSQPDYNQYNQQPRRPATPPPPPSPPQVSAWDFMNVFDGYDNGYQDYNSGNRYGYGSIQSSPDSNEVREREGIPELEYETEPEALKEIKERKKLNVETMNKNMNSGEGTSKFVPPQSSEDNSKSVPLPNSGSSTVSKEKGMINSPDTIVSKKSEQEEPEEKKEVSFEIEETSTLDVESSKKSNLATFTAYGTRDLQEVVNEIKDEFEAASSYGKEVAMLLEVGKLPYRSKITVLKVILSRIQYLVAPSSASSQPPLILLDPKTVKMAKAYSGVGSPGNEFDLKSGSLSSTLEKLYVWEKKLYKEVKDEERLRVIYEKLCKKLKRLDDHGADSTKIDATHASIRKLLTKIDICIKAADAISSRIHKLRDEELQPQLTELIHGWIKMWSSILKCHQKQFQAVMESKIRSLKARTGSRRDESLKATVDLEMELVNWCARFNNWIRTQKAYVESLNGWLLRCLNNEPEETADGVAPFSPGRMGAPPIFIICNDWHQAMLEISEDKVVGAIHGFALNLHELWERQDEEQRQRIKANFLYKDFEEHLRTLKMERAMLKPDQDEASGRTVLSKFPSESGVLPPDDLKVNLDSLRKKLYDERAKHKDAIKLVHNAASNSIQAGLVPIFEALEKFSSEVMKAHEQVRL 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 105339029 105345426 - Tan0005302.1 Tan01g4039 741463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4039 867 MobiDBLite consensus disorder prediction 223 241 - -
Tan01g4039 867 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Tan01g4039 867 MobiDBLite consensus disorder prediction 326 392 - -
Tan01g4039 867 MobiDBLite consensus disorder prediction 279 312 - -
Tan01g4039 867 Pfam Protein of unknown function (DUF632) 423 742 IPR006867 -
Tan01g4039 867 MobiDBLite consensus disorder prediction 65 159 - -
Tan01g4039 867 MobiDBLite consensus disorder prediction 113 127 - -
Tan01g4039 867 MobiDBLite consensus disorder prediction 189 210 - -
Tan01g4039 867 MobiDBLite consensus disorder prediction 97 111 - -
Tan01g4039 867 MobiDBLite consensus disorder prediction 242 256 - -
Tan01g4039 867 MobiDBLite consensus disorder prediction 326 377 - -
Tan01g4039 867 MobiDBLite consensus disorder prediction 292 312 - -
Tan01g4039 867 MobiDBLite consensus disorder prediction 378 392 - -
Tan01g4039 867 PANTHER UNCHARACTERIZED 1 866 - -
Tan01g4039 867 MobiDBLite consensus disorder prediction 223 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4039 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4039 Tan-Chr1:105339029 Tan02g0593 Tan-Chr2:5260789 1.50E-105 dispersed
Tan01g4039 Tan-Chr1:105339029 Tan01g4040 Tan-Chr1:105339029 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g249 . Blo12g01126 . . . Bpe04g00008 . . . . Cma01g01385 Cma09g00786 . . . Cpe06g00620 . . . . . . . . . . . . . . . Cone4ag1415 Cone7ag1523 Cone17ag1288 . Lsi04g02398 Csa04g01790 . . . . . . . . . . . Cmo01g01435 Cmo09g00777 . . . . . . Bhi09g02691 Tan01g4039 . . Hepe01g2294 . . . . . . . . . . . Chy07g00629 Cme07g00836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007330 0 3 0 0 1 0 1 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 2 35