Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4059 ATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTGGCGCATCAGGATGAAGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCCAGTTGTCCTCACATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTCGCGATTGCCCATCAACTATTCGGTCCTGAACTTTACAAGTCCAGAGTTTTGGAATTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTATCCTTGCCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACCATGGAAACACACTCCAAAGTAACACGATTCTTTTTTATATGCAACTATATTAGCAGGATTATAGAGCCCCTTGCATCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTCTCTGAAGAGGTTATGAGCAAGCGTATATTGCACATTAGTAACGAAGAAGGTCTAATTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGGGACCTACGTCGAGCTATCACATATTTACAGTCAGCAGCACGCTTATTTGGATCATCAATCTCTTCCAAGGATCTGATTAGTGTGTCTGGGGTTATCCCTCGGGAGGTCGTTGATGCCCTTTTTGCTGCTTGTAGAAGTGGTAACTTTGATCTTGCAAACAAGGAAGTCAATAATGTAATTGCAGATGGATATCCAGTGGCTCAGATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGCCCATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTCTCGTGGATGGTGCGGATGAATATTTGCAGCTGCTCGATGTGGTTAGTCAAACAATGCAAGCTTTAAATAGTATGCAACTGTAA 1011 45.1 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLILDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVIPREVVDALFAACRSGNFDLANKEVNNVIADGYPVAQMLSQIFEVVVEAHDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQALNSMQL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 105531960 105536794 + Tan0019314.1 Tan01g4059 741483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4059 336 FunFam Replication factor C subunit 5 3 174 - -
Tan01g4059 336 Gene3D - 176 239 - -
Tan01g4059 336 Pfam Replication factor C C-terminal domain 241 325 IPR013748 -
Tan01g4059 336 Gene3D - 3 173 IPR027417 -
Tan01g4059 336 Gene3D - 240 330 - -
Tan01g4059 336 CDD AAA 26 166 - -
Tan01g4059 336 Pfam ATPase family associated with various cellular activities (AAA) 45 173 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan01g4059 336 FunFam Replication factor C subunit 4 240 329 - -
Tan01g4059 336 SUPERFAMILY post-AAA+ oligomerization domain-like 240 326 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Tan01g4059 336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 331 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Tan01g4059 336 SMART AAA_5 41 174 IPR003593 GO:0016887(InterPro)
Tan01g4059 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Tan01g4059 336 FunFam Replication factor C subunit 4 176 239 - -
Tan01g4059 336 CDD HLD_clamp_RFC 174 233 IPR047854 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1944 Tan-Chr1:21299339 Tan01g4059 Tan-Chr1:105531960 1.10E-50 dispersed
Tan01g4059 Tan-Chr1:105531960 Tan11g1257 Tan-Chr11:10727153 7.80E-47 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4059 K10755 - csv:101221224 627.476