Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4061 ATGCTGAAGCCGAAGCCATTCGCCGGAGCCAACGTGTTCTTGTCCCGCAATCTTGTTGCTCCGGAGATATTCGACGCTATTCACGATGCTCTGAAGCAGAATGGGGCTGAGGTCTTTCTCTGTTGCGATCCCTCTCGAAACGGACCTAATGACTATCATGTTATCTCCTCCGCGGACCACGAAAAGTTCGAGGATCTTCGCGCGAAGGGGTGCAATTTGCTAGGTCCTCAGTGCGCGCTTTCATGTGCAAAGGCGTACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCATTGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGAGGATGAAAAGGTTGAGATACGGGAGTTAGTTACTGCAATGGGAGGAGTATTGCTTATGAAAGCGTCTCTAGATGTCACCTTTGTTATCGTGAAGAATGTTTTGGCCGCAAAATACAAGTGGGCACTAAACACTTCAAAGAAACCTATTGTCACAACTGCTTGGTTACAACAGTGCTGGATTGAACATCGTGTAGTGCCGCAGGAGGAATATCGAGTCCTTCCATTTTCTGGATTGAATATTTCGGTGTCTAGAATTCCAGCAGACGAGCGCAAAGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATATTCTGCTGATCTTACAAAGAAGTGTACACATTTGATATCTCCTGAAGGTGACAAATACAAGGTTGCACGAACATGGGGCCATATCAATATTGTTACTCGGAAATGGTTTGATCAATGCATAGCTGGAAGAACATGTTGTAATGAGGCGTTTTACCAAGTTGGTAGCGTTTCTGGAACTTCAAATAAAATGGCAAGGGGTTGCTTGACAGCTCATAATAGCCAAGAAAAGGTTATTGGGAACTTGCAAGCTGCACCATCCTCATTTATTGCTGATTCAAATTTCTCAGCAGTCTCTGGCCCTGGGTTTTCAGATATGGATTTAGAAGCTACTCTTTCACAGAGCACATCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGGTGTTGAAGTGCCAGTTACAATGGCAAAGAACGAAGCAAACACTGATAATTGTATTGCAAATGACTTCCAATCTGAAGACAGTGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGCAAGATTATGAATATGATTCGCAGAGGTGGAGGCTCCCGGTACATGTTGTTCAATGACAAGTTAACACACATAATAGTTGGAAATCCGTCAGAAATGGAGAAAAGGGAAGTAAGAGATATTGCAGCTTCAGGTGTCATCCATGTGGTTAGAACCACCTGGCTTGAGGATTGTGATCGTCAGAAGAAGGAGATCCCTGTTCTTGGCAGACATATGGCCTATGATGAACTTATTCCTAAAGCATCCAGTAAAACAAGCTCCATCGTTATGGATCAGAATAAAGTTCCTAATGTTCAACCAATCATGCCATCAAATGGGTTAGAAGGAAATATTCATGTTAGAATTGGAAAGACATCAACGACAGAGGAAAAAAATCCAGAAAAAATTGAAGCAAATATCAGTGGAGACAGGACCATGAAACTATCCCAGAAAAGCCAACCTTCTGCAGCAAATGGTACAAACAAGAGTCAAGAAACGATGTGGCGTGATTTCACAGTTCCAAATGGGAAGTCATCATGTGTGTTTAAGGGGAAAATATTTTGCTTTTCTAGTTCCTTTCCAGAAGATCGGAGAGCTGAAATTGTTGAATGGGTAAATCAAGGGGGAGGGGAGGTTGTTGAGGATCATATGAAACAGAAAGTGCACTTCACTGTTGAATGTCATGGTGAGACACCAAGGAGTACAGATATCCATACTACATACGTGTCAAGTCATTGGGTCCGATCATGTTTAGAGGATGTATGCTTGTGGGATACCAATGGGCACATTCTCTATTCTCCACTTCCTTGTCGTGTCCCTTTGCCTGGGTTTGAAAATATTCGGTTCTGTGTTTCACAATATGAAGATAAAGATCGAGTACTGTTAAGAAACCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGATGGGCCAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCCATTACAGCTGAATGGATATATGAGTGCGTTAGACAGAGTAAGATCGTTTCTCTTGATTTGTATCGTCCAAAAGAAGTTACAGCTCAAGACAGAGAGGCTGGCTTATGCACTGTAAGTCAGTTTCCTACACAAGCAGCCCAAATGATAGCCGGTGAAAGTCAATCCCAGTTCCCTATCCATTCTGCTATCCTGAGAGACCAATCAGATGGAACTAACAGTAGCTCTATGGGAGAAGTTGAACAATTAAGTTTTACTAATAAAAAACGCAAGTTCCTTGACGAAGCTTTACAAAAGCGTCCACCCTTTGTTGGAAACAGTCTCACTCATTTTGACTGCAATTTGAACTCCACAAGAGAAACTACATCAAAATCTTCTGTAGTACCATCACATGTTCCTGATGTTGCTGCCGCAATTGAGGACTTGTTGGAGCAGACAAGTAAGATTCATGATCCGAAGTCACCTGGAAAGACTGGTTGCGGCAAAAGTATTTTCCCGCCCGACTGTTCCGTCATTGATCAAGACCATTCAGAAGCTCATCCAATTAGTGGTTTATCTAACCAGTGGTTAAAAAGAGCTGAAAGAAAAGAAGACGTCAGCAATCCTACTAGTGGTAATGGGAGTGCAGGCATATATGATGGTTTTAGTGAAACACAAACCGAGTCTCAGGTTGTGGGTTATGAGGAGGATTTGTCAGGAAGGCAAATGCTTATAGACAGAGTTCGAACCCGGAGTAGCATGACTTGA 2907 42.45 MLKPKPFAGANVFLSRNLVAPEIFDAIHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKGCNLLGPQCALSCAKAYRPLPQQGFTCCLALDGVKILASGFQEDEKVEIRELVTAMGGVLLMKASLDVTFVIVKNVLAAKYKWALNTSKKPIVTTAWLQQCWIEHRVVPQEEYRVLPFSGLNISVSRIPADERKEIEKLILQNGGRYSADLTKKCTHLISPEGDKYKVARTWGHINIVTRKWFDQCIAGRTCCNEAFYQVGSVSGTSNKMARGCLTAHNSQEKVIGNLQAAPSSFIADSNFSAVSGPGFSDMDLEATLSQSTSMFSDASHFINEVGVEVPVTMAKNEANTDNCIANDFQSEDSDLYLSACRIKVVGFEASEMRKIMNMIRRGGGSRYMLFNDKLTHIIVGNPSEMEKREVRDIAASGVIHVVRTTWLEDCDRQKKEIPVLGRHMAYDELIPKASSKTSSIVMDQNKVPNVQPIMPSNGLEGNIHVRIGKTSTTEEKNPEKIEANISGDRTMKLSQKSQPSAANGTNKSQETMWRDFTVPNGKSSCVFKGKIFCFSSSFPEDRRAEIVEWVNQGGGEVVEDHMKQKVHFTVECHGETPRSTDIHTTYVSSHWVRSCLEDVCLWDTNGHILYSPLPCRVPLPGFENIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGPKYEAACKWGIHSITAEWIYECVRQSKIVSLDLYRPKEVTAQDREAGLCTVSQFPTQAAQMIAGESQSQFPIHSAILRDQSDGTNSSSMGEVEQLSFTNKKRKFLDEALQKRPPFVGNSLTHFDCNLNSTRETTSKSSVVPSHVPDVAAAIEDLLEQTSKIHDPKSPGKTGCGKSIFPPDCSVIDQDHSEAHPISGLSNQWLKRAERKEDVSNPTSGNGSAGIYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMT 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 105549885 105558222 - Tan0021013.1 Tan01g4061 741485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4061 968 FunFam Transcription coactivator 559 654 - -
Tan01g4061 968 Gene3D BRCT domain 29 94 IPR036420 -
Tan01g4061 968 Gene3D BRCT domain 186 270 IPR036420 -
Tan01g4061 968 FunFam Transcription coactivator 97 185 - -
Tan01g4061 968 MobiDBLite consensus disorder prediction 920 946 - -
Tan01g4061 968 CDD BRCT_TopBP1_rpt2_like 659 734 - -
Tan01g4061 968 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Tan01g4061 968 SMART BRCT_7 184 259 IPR001357 -
Tan01g4061 968 SMART BRCT_7 563 638 IPR001357 -
Tan01g4061 968 SMART BRCT_7 373 453 IPR001357 -
Tan01g4061 968 SMART BRCT_7 97 174 IPR001357 -
Tan01g4061 968 SMART BRCT_7 658 734 IPR001357 -
Tan01g4061 968 FunFam DNA topoisomerase II binding protein 1 187 277 - -
Tan01g4061 968 FunFam Transcription coactivator 353 463 - -
Tan01g4061 968 CDD BRCT 103 170 - -
Tan01g4061 968 CDD BRCT_TopBP1_rpt2_like 186 257 - -
Tan01g4061 968 Gene3D BRCT domain 98 185 IPR036420 -
Tan01g4061 968 ProSiteProfiles BRCT domain profile. 561 648 IPR001357 -
Tan01g4061 968 MobiDBLite consensus disorder prediction 915 948 - -
Tan01g4061 968 Pfam BRCA1 C Terminus (BRCT) domain 565 609 IPR001357 -
Tan01g4061 968 Pfam BRCA1 C Terminus (BRCT) domain 376 449 IPR001357 -
Tan01g4061 968 SUPERFAMILY BRCT domain 626 745 IPR036420 -
Tan01g4061 968 FunFam Transcription coactivator 36 94 - -
Tan01g4061 968 Gene3D BRCT domain 352 459 IPR036420 -
Tan01g4061 968 SUPERFAMILY BRCT domain 565 650 IPR036420 -
Tan01g4061 968 Gene3D BRCT domain 558 654 IPR036420 -
Tan01g4061 968 Pfam twin BRCT domain 665 726 IPR001357 -
Tan01g4061 968 Pfam twin BRCT domain 103 166 IPR001357 -
Tan01g4061 968 Pfam twin BRCT domain 190 251 IPR001357 -
Tan01g4061 968 ProSiteProfiles BRCT domain profile. 661 744 IPR001357 -
Tan01g4061 968 Gene3D BRCT domain 659 751 IPR036420 -
Tan01g4061 968 ProSiteProfiles BRCT domain profile. 371 463 IPR001357 -
Tan01g4061 968 CDD BRCT_TopBP1_rpt3 370 454 - -
Tan01g4061 968 SUPERFAMILY BRCT domain 186 270 IPR036420 -
Tan01g4061 968 ProSiteProfiles BRCT domain profile. 182 269 IPR001357 -
Tan01g4061 968 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 966 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Tan01g4061 968 SUPERFAMILY BRCT domain 373 457 IPR036420 -
Tan01g4061 968 SUPERFAMILY BRCT domain 57 184 IPR036420 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4061 Tan-Chr1:105549885 Tan09g0155 Tan-Chr9:8184800 7.80E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4061 K10728 - csv:101212525 1607.04