Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g4061 | ATGCTGAAGCCGAAGCCATTCGCCGGAGCCAACGTGTTCTTGTCCCGCAATCTTGTTGCTCCGGAGATATTCGACGCTATTCACGATGCTCTGAAGCAGAATGGGGCTGAGGTCTTTCTCTGTTGCGATCCCTCTCGAAACGGACCTAATGACTATCATGTTATCTCCTCCGCGGACCACGAAAAGTTCGAGGATCTTCGCGCGAAGGGGTGCAATTTGCTAGGTCCTCAGTGCGCGCTTTCATGTGCAAAGGCGTACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCATTGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGAGGATGAAAAGGTTGAGATACGGGAGTTAGTTACTGCAATGGGAGGAGTATTGCTTATGAAAGCGTCTCTAGATGTCACCTTTGTTATCGTGAAGAATGTTTTGGCCGCAAAATACAAGTGGGCACTAAACACTTCAAAGAAACCTATTGTCACAACTGCTTGGTTACAACAGTGCTGGATTGAACATCGTGTAGTGCCGCAGGAGGAATATCGAGTCCTTCCATTTTCTGGATTGAATATTTCGGTGTCTAGAATTCCAGCAGACGAGCGCAAAGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATATTCTGCTGATCTTACAAAGAAGTGTACACATTTGATATCTCCTGAAGGTGACAAATACAAGGTTGCACGAACATGGGGCCATATCAATATTGTTACTCGGAAATGGTTTGATCAATGCATAGCTGGAAGAACATGTTGTAATGAGGCGTTTTACCAAGTTGGTAGCGTTTCTGGAACTTCAAATAAAATGGCAAGGGGTTGCTTGACAGCTCATAATAGCCAAGAAAAGGTTATTGGGAACTTGCAAGCTGCACCATCCTCATTTATTGCTGATTCAAATTTCTCAGCAGTCTCTGGCCCTGGGTTTTCAGATATGGATTTAGAAGCTACTCTTTCACAGAGCACATCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGGTGTTGAAGTGCCAGTTACAATGGCAAAGAACGAAGCAAACACTGATAATTGTATTGCAAATGACTTCCAATCTGAAGACAGTGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGCAAGATTATGAATATGATTCGCAGAGGTGGAGGCTCCCGGTACATGTTGTTCAATGACAAGTTAACACACATAATAGTTGGAAATCCGTCAGAAATGGAGAAAAGGGAAGTAAGAGATATTGCAGCTTCAGGTGTCATCCATGTGGTTAGAACCACCTGGCTTGAGGATTGTGATCGTCAGAAGAAGGAGATCCCTGTTCTTGGCAGACATATGGCCTATGATGAACTTATTCCTAAAGCATCCAGTAAAACAAGCTCCATCGTTATGGATCAGAATAAAGTTCCTAATGTTCAACCAATCATGCCATCAAATGGGTTAGAAGGAAATATTCATGTTAGAATTGGAAAGACATCAACGACAGAGGAAAAAAATCCAGAAAAAATTGAAGCAAATATCAGTGGAGACAGGACCATGAAACTATCCCAGAAAAGCCAACCTTCTGCAGCAAATGGTACAAACAAGAGTCAAGAAACGATGTGGCGTGATTTCACAGTTCCAAATGGGAAGTCATCATGTGTGTTTAAGGGGAAAATATTTTGCTTTTCTAGTTCCTTTCCAGAAGATCGGAGAGCTGAAATTGTTGAATGGGTAAATCAAGGGGGAGGGGAGGTTGTTGAGGATCATATGAAACAGAAAGTGCACTTCACTGTTGAATGTCATGGTGAGACACCAAGGAGTACAGATATCCATACTACATACGTGTCAAGTCATTGGGTCCGATCATGTTTAGAGGATGTATGCTTGTGGGATACCAATGGGCACATTCTCTATTCTCCACTTCCTTGTCGTGTCCCTTTGCCTGGGTTTGAAAATATTCGGTTCTGTGTTTCACAATATGAAGATAAAGATCGAGTACTGTTAAGAAACCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGATGGGCCAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCCATTACAGCTGAATGGATATATGAGTGCGTTAGACAGAGTAAGATCGTTTCTCTTGATTTGTATCGTCCAAAAGAAGTTACAGCTCAAGACAGAGAGGCTGGCTTATGCACTGTAAGTCAGTTTCCTACACAAGCAGCCCAAATGATAGCCGGTGAAAGTCAATCCCAGTTCCCTATCCATTCTGCTATCCTGAGAGACCAATCAGATGGAACTAACAGTAGCTCTATGGGAGAAGTTGAACAATTAAGTTTTACTAATAAAAAACGCAAGTTCCTTGACGAAGCTTTACAAAAGCGTCCACCCTTTGTTGGAAACAGTCTCACTCATTTTGACTGCAATTTGAACTCCACAAGAGAAACTACATCAAAATCTTCTGTAGTACCATCACATGTTCCTGATGTTGCTGCCGCAATTGAGGACTTGTTGGAGCAGACAAGTAAGATTCATGATCCGAAGTCACCTGGAAAGACTGGTTGCGGCAAAAGTATTTTCCCGCCCGACTGTTCCGTCATTGATCAAGACCATTCAGAAGCTCATCCAATTAGTGGTTTATCTAACCAGTGGTTAAAAAGAGCTGAAAGAAAAGAAGACGTCAGCAATCCTACTAGTGGTAATGGGAGTGCAGGCATATATGATGGTTTTAGTGAAACACAAACCGAGTCTCAGGTTGTGGGTTATGAGGAGGATTTGTCAGGAAGGCAAATGCTTATAGACAGAGTTCGAACCCGGAGTAGCATGACTTGA | 2907 | 42.45 | MLKPKPFAGANVFLSRNLVAPEIFDAIHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKGCNLLGPQCALSCAKAYRPLPQQGFTCCLALDGVKILASGFQEDEKVEIRELVTAMGGVLLMKASLDVTFVIVKNVLAAKYKWALNTSKKPIVTTAWLQQCWIEHRVVPQEEYRVLPFSGLNISVSRIPADERKEIEKLILQNGGRYSADLTKKCTHLISPEGDKYKVARTWGHINIVTRKWFDQCIAGRTCCNEAFYQVGSVSGTSNKMARGCLTAHNSQEKVIGNLQAAPSSFIADSNFSAVSGPGFSDMDLEATLSQSTSMFSDASHFINEVGVEVPVTMAKNEANTDNCIANDFQSEDSDLYLSACRIKVVGFEASEMRKIMNMIRRGGGSRYMLFNDKLTHIIVGNPSEMEKREVRDIAASGVIHVVRTTWLEDCDRQKKEIPVLGRHMAYDELIPKASSKTSSIVMDQNKVPNVQPIMPSNGLEGNIHVRIGKTSTTEEKNPEKIEANISGDRTMKLSQKSQPSAANGTNKSQETMWRDFTVPNGKSSCVFKGKIFCFSSSFPEDRRAEIVEWVNQGGGEVVEDHMKQKVHFTVECHGETPRSTDIHTTYVSSHWVRSCLEDVCLWDTNGHILYSPLPCRVPLPGFENIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGPKYEAACKWGIHSITAEWIYECVRQSKIVSLDLYRPKEVTAQDREAGLCTVSQFPTQAAQMIAGESQSQFPIHSAILRDQSDGTNSSSMGEVEQLSFTNKKRKFLDEALQKRPPFVGNSLTHFDCNLNSTRETTSKSSVVPSHVPDVAAAIEDLLEQTSKIHDPKSPGKTGCGKSIFPPDCSVIDQDHSEAHPISGLSNQWLKRAERKEDVSNPTSGNGSAGIYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMT | 968 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 105549885 | 105558222 | - | Tan0021013.1 | Tan01g4061 | 741485 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g4061 | 968 | FunFam | Transcription coactivator | 559 | 654 | - | - | |
Tan01g4061 | 968 | Gene3D | BRCT domain | 29 | 94 | IPR036420 | - | |
Tan01g4061 | 968 | Gene3D | BRCT domain | 186 | 270 | IPR036420 | - | |
Tan01g4061 | 968 | FunFam | Transcription coactivator | 97 | 185 | - | - | |
Tan01g4061 | 968 | MobiDBLite | consensus disorder prediction | 920 | 946 | - | - | |
Tan01g4061 | 968 | CDD | BRCT_TopBP1_rpt2_like | 659 | 734 | - | - | |
Tan01g4061 | 968 | ProSiteProfiles | BRCT domain profile. | 100 | 184 | IPR001357 | - | |
Tan01g4061 | 968 | SMART | BRCT_7 | 184 | 259 | IPR001357 | - | |
Tan01g4061 | 968 | SMART | BRCT_7 | 563 | 638 | IPR001357 | - | |
Tan01g4061 | 968 | SMART | BRCT_7 | 373 | 453 | IPR001357 | - | |
Tan01g4061 | 968 | SMART | BRCT_7 | 97 | 174 | IPR001357 | - | |
Tan01g4061 | 968 | SMART | BRCT_7 | 658 | 734 | IPR001357 | - | |
Tan01g4061 | 968 | FunFam | DNA topoisomerase II binding protein 1 | 187 | 277 | - | - | |
Tan01g4061 | 968 | FunFam | Transcription coactivator | 353 | 463 | - | - | |
Tan01g4061 | 968 | CDD | BRCT | 103 | 170 | - | - | |
Tan01g4061 | 968 | CDD | BRCT_TopBP1_rpt2_like | 186 | 257 | - | - | |
Tan01g4061 | 968 | Gene3D | BRCT domain | 98 | 185 | IPR036420 | - | |
Tan01g4061 | 968 | ProSiteProfiles | BRCT domain profile. | 561 | 648 | IPR001357 | - | |
Tan01g4061 | 968 | MobiDBLite | consensus disorder prediction | 915 | 948 | - | - | |
Tan01g4061 | 968 | Pfam | BRCA1 C Terminus (BRCT) domain | 565 | 609 | IPR001357 | - | |
Tan01g4061 | 968 | Pfam | BRCA1 C Terminus (BRCT) domain | 376 | 449 | IPR001357 | - | |
Tan01g4061 | 968 | SUPERFAMILY | BRCT domain | 626 | 745 | IPR036420 | - | |
Tan01g4061 | 968 | FunFam | Transcription coactivator | 36 | 94 | - | - | |
Tan01g4061 | 968 | Gene3D | BRCT domain | 352 | 459 | IPR036420 | - | |
Tan01g4061 | 968 | SUPERFAMILY | BRCT domain | 565 | 650 | IPR036420 | - | |
Tan01g4061 | 968 | Gene3D | BRCT domain | 558 | 654 | IPR036420 | - | |
Tan01g4061 | 968 | Pfam | twin BRCT domain | 665 | 726 | IPR001357 | - | |
Tan01g4061 | 968 | Pfam | twin BRCT domain | 103 | 166 | IPR001357 | - | |
Tan01g4061 | 968 | Pfam | twin BRCT domain | 190 | 251 | IPR001357 | - | |
Tan01g4061 | 968 | ProSiteProfiles | BRCT domain profile. | 661 | 744 | IPR001357 | - | |
Tan01g4061 | 968 | Gene3D | BRCT domain | 659 | 751 | IPR036420 | - | |
Tan01g4061 | 968 | ProSiteProfiles | BRCT domain profile. | 371 | 463 | IPR001357 | - | |
Tan01g4061 | 968 | CDD | BRCT_TopBP1_rpt3 | 370 | 454 | - | - | |
Tan01g4061 | 968 | SUPERFAMILY | BRCT domain | 186 | 270 | IPR036420 | - | |
Tan01g4061 | 968 | ProSiteProfiles | BRCT domain profile. | 182 | 269 | IPR001357 | - | |
Tan01g4061 | 968 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 23 | 966 | - | GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER) | |
Tan01g4061 | 968 | SUPERFAMILY | BRCT domain | 373 | 457 | IPR036420 | - | |
Tan01g4061 | 968 | SUPERFAMILY | BRCT domain | 57 | 184 | IPR036420 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g4061 | Tan-Chr1:105549885 | Tan09g0155 | Tan-Chr9:8184800 | 7.80E-07 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g4061 | K10728 | - | csv:101212525 | 1607.04 |