Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4113 ATGGTAACAGGTTTACAGGTGGGGGAAATTTCCTGTCCGATTCAACGAAGAGGGCGGGGCAGTAAGCAGCTTCTTCTATGCCAGGTGTCGTTTTCCTTGTGGCAGCTCGTTGTTACCATATTACTATATGTTCAAGAAAACCATTCCAGTATTTGGTATCTCAGATGGTTTGTTGTAATTGTATTATGCTTGACTGGTGCCACCATGGACTTCTATACGGTAAAATGGCAATGGATGCTGATTCTTCACATTGTACCGCTTTGCACGATAATGAGCAGAAGCAGCGGTATCAGTTCCGATGGTGAGGCGCTTTTGAGCTTCAGAGCGGCAATTCTTGATTCTGATGGCGTTCTTCTTCAATGGAAGCCAGAGGAATCCCATCCTTGTAAATGGAAAGGAGTGACGTGTGATCCAAAAACTAAGAGAGTGATATATCTGAGTCTTCCTTATCACAAACTTAGTGGATCTTTATCCCCTGAACTTGGAAAGCTTGATCACCTAAAACTTTTAGCTCTCCATGACAATAACTTTTATGGGACAATTCCATCAGAATTAGGGAATTGCTCACAGTTGCAGGAATGTAAGTTTCTGCAGGGTAATTACTTTAGTGGGTTCATTCCCAATGAATTGGGGAATCTTTCGGCACTTAAAAATTTAGATATTTCAAGTAACTCGCTCGGCGGAAATATTCCCATCTCGCTTGGGAAGTTGAGCAAGCTTATTACTCTAAATGTGTCTGCCAATTTTCTGGTTGGATCAATACCAAATGTTGGAGTGCTAATAAACTTCGCCGAAAGCTCATTTCTTGGAAACCGTGGCTTGTGCGGGAAACAAATAAATGTTATGTGCAAAGATGACAAAGAGGAACCTGGTACAAATGAGTCACCATTCTCAGTGCAAAATCAAATTGGGAGGAAGAAGTACTCTGGCCGACTACTTATAAGTGCTTCGGCAACTGTGGGTGCTTTACTACTGGTGGCCCTAATGTGTTTCTGGGGTTGCTTTCTGTATAAAAAGTTCGGCAAAAATGACAGTAAAGGTCTAGTGCTGGACGTTTGTGGAGGTGCTTCGGGTGTAATGTTTCACGGAGACTTGCCATACTCCTCTAAAGATATTATTAAGAAATTTGAGTCATTGAATGAAGAACACATAATAGGATGTGGGGGCTTTGGAACCGTGTACAAGCTTGCAATGGATGATGGAAATGTTTTTGCCTTGAAAAGAATTATAAAATTGAATGAAGGCTTTGATCGTTTTTTTGAGAGAGAGCTCGAAATACTTGGAAGCATAAAGCACAGGTTCCTTGTGAATTTGCGAGGATATTGCAATTCTCCTACATCAAAGCTGTTAATGTATGATTTCCTTCCTGGAGGCAGCCTTGATGAGGCACTGCACGGTGTCCGTACTGAAGTATCTGAGCAACTAGACTGGGATGCGCGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCATATTTGCATCATGATTGCTCTCCGCGGATCATTCACCGAGACATAAAATCAAGCAACATTTTACTTGATGCTAATTTGGAGGCTCGAGTTTCTGATTTTGGACTTGCGAAGCTTTTAGAGGATGAAGAATCACATATCACAACTATTGTTGCAGGAACATTTGGTTATCTGGCTCCTGAGTATATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTATACAGTTTTGGGGTATTGGTACTTGAAGTGTTGAGTGGCAAACGTCCCACCGATGCGTCATTCATTGAAAAGGGGCTAAACATTGTTGGTTGGTTAAACTTTCTAGTTACAGAGAATCGACAACGAGAAATCGCTGACGTACAGTGCGAGGGAATGCAGACAGAAAGCCTCGATGCATTGCTTTCGGTTGCCATCCAATGTGTTTCGTCGAGTCCAGAGGAACGACCAACCATGCACAGGGTGGTCCAGATACTGGAATCTGAGATTATGACTCCATGCCCTAGTGATTTCTACGATACAGATTAA 2001 42.28 MVTGLQVGEISCPIQRRGRGSKQLLLCQVSFSLWQLVVTILLYVQENHSSIWYLRWFVVIVLCLTGATMDFYTVKWQWMLILHIVPLCTIMSRSSGISSDGEALLSFRAAILDSDGVLLQWKPEESHPCKWKGVTCDPKTKRVIYLSLPYHKLSGSLSPELGKLDHLKLLALHDNNFYGTIPSELGNCSQLQECKFLQGNYFSGFIPNELGNLSALKNLDISSNSLGGNIPISLGKLSKLITLNVSANFLVGSIPNVGVLINFAESSFLGNRGLCGKQINVMCKDDKEEPGTNESPFSVQNQIGRKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDSKGLVLDVCGGASGVMFHGDLPYSSKDIIKKFESLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIIKLNEGFDRFFERELEILGSIKHRFLVNLRGYCNSPTSKLLMYDFLPGGSLDEALHGVRTEVSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIADVQCEGMQTESLDALLSVAIQCVSSSPEERPTMHRVVQILESEIMTPCPSDFYDTD 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 105970613 105980914 - Tan0018934.1 Tan01g4113 741537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4113 666 Pfam Leucine Rich Repeat 166 188 IPR001611 GO:0005515(InterPro)
Tan01g4113 666 Pfam Leucine Rich Repeat 216 237 IPR001611 GO:0005515(InterPro)
Tan01g4113 666 SUPERFAMILY Protein kinase-like (PK-like) 365 650 IPR011009 -
Tan01g4113 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4113 666 ProSiteProfiles Protein kinase domain profile. 379 655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4113 666 Pfam Leucine rich repeat N-terminal domain 98 137 IPR013210 -
Tan01g4113 666 ProSitePatterns Protein kinases ATP-binding region signature. 385 411 IPR017441 GO:0005524(InterPro)
Tan01g4113 666 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 140 255 IPR051564 GO:0016020(PANTHER)
Tan01g4113 666 SUPERFAMILY L domain-like 97 258 - -
Tan01g4113 666 Gene3D Ribonuclease Inhibitor 97 285 IPR032675 -
Tan01g4113 666 Gene3D Transferase(Phosphotransferase) domain 1 455 657 - -
Tan01g4113 666 Gene3D Phosphorylase Kinase; domain 1 356 454 - -
Tan01g4113 666 SMART serkin_6 379 655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4113 666 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 97 260 - -
Tan01g4113 666 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 455 661 - -
Tan01g4113 666 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 353 454 - -
Tan01g4113 666 Pfam Protein kinase domain 381 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1044 Tan-Chr1:10243473 Tan01g4113 Tan-Chr1:105970613 4.20E-221 dispersed
Tan01g4113 Tan-Chr1:105970613 Tan09g2164 Tan-Chr9:71719720 5.30E-132 dispersed
Tan11g1091 Tan-Chr11:8638157 Tan01g4113 Tan-Chr1:105970613 4.10E-57 dispersed
Tan01g4113 Tan-Chr1:105970613 Tan05g2077 Tan-Chr5:71201561 1.60E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67112 PF00069 Pkinase 5.20E-45 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4113 - - - 0.0