Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4174 ATGACGTCAAGTGCTGATGAAGATGAAAGGGATCCAGCCCTGGAGTCTGGAGAATCTGAGGAAGGAATAGTTGTCCGGGAAGTCTGTGCAAATGGGATTTCCATAAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATTCAAGAGGCAGAATCATCCTTACGGGAAGGGTTGTCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGAAAGTTGGAATATCAGAGAGGTAATGTCGAAGGTGCTCTACGTGTGTTTGATGGTATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTGCATTGCTGAGAAGACGCCTCCAAAAAAAGGACGTGCGCGCCCTGAATCTCAACATGCAGTTTCGCAGCATGCTGCAAACCTGGTGCTTGAAGCCATATATTTAAAAGTGAAATCTCTTCAGAAGCTAGGGAGAGTAAATGAGGCGGCTGATGAGTGTACTAGTGTGCTTGATGCCGTAGAGAAGATATTCCAGCAAGGAATTCCTGATGGTCAAGTGGATGGTAGATTGCAAGAGACTGTCAGTCAGGCTGTAGAACTTCTCCCTGAGCTATGGAAGCAGGCTGGATGTTTCCAGGATGCAATATCTGCCTATAGGCGTGCCCTCTTAAACCAATGGAACCTCAGTAGTGAAAGCTGGGCTAGGATCCAGAAAGGATTTGCTGTGTTTTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCGAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGCTTCTGGTGAAGAAATGTTACCTTGGTAAGATAAAATGGGATCCATCGGTGATGGAGCACCTAATATTTGCTCTATCCTTATGCAGTCAGACTTCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCGCCGTGTAGATCGTTGGAAGTCTTTAGCTCTTTGTTATTGTGCAGCAGGACAGAACAAAGTTGCCTTGAACCTTCTGAGAAAGTCCCTACACAAACACGAGCAACCAGATGATGTAGCAGCCTTATTACTGGCTGCCAAAATCTGTAGTGAGGATCCTTATCTCGCTGCTGAAGGTGTTGGATACGCCCAGCGAGCAATGAACAATTCTATAGGAGATGAAGAGCATTTAAAGGGTGTGGGTCTTCGCTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGTCTTCCTCTGACTTCGAGAGGTCCCGTCTTCAGTCAGAAGCTTTGAAATCTCTTGAGGCAGCAAGTGGTCTGGAGAGCAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAGTATTCAGAATATCGGAATTTAAATGCTGCTTTACAATATGCAAAGAAGTTCATTGATGAAACTGGTGGCTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTATCTGCCCAAAAGAGATTTTCAGAGGCTGAAGTGGTCACTGATGCTGCAATGGATGAGACCACAAAATGGGAACAAGGACCACTTCTCAGACTCAAGGCAAAGCTGAAGATCTCTCAATCATTACATATGGATGCTATTGAAACTTACCGTTATCTACTTGCATTAGTTCAAGCGCAAAAGAAATCCTTTGGGCCGCTCAGAATTGTCCCTCAGGTTGAAGATGATAAATTGAATGAATTTGAAGTTTGGAACGGTCTAGCCAATTTATACTCCAGCCTTTCATATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCAAAAGAGCTGAAAGAGTTCTCCCCAGAAGTACTACATACTGAAGGTCTAATGTGTGAAGGACGTGAGAAAGTACAGGAAGCTCTAGCTGCTTATATTAATGCTCTCCTACTTGAACCGAGTTATGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCGAAAGCGGGCCCGGACGCATTGCCAATAGCAAGAAGCCTACTTTCAGACGCGTTGAGATTAGATCCTACAAACCGTAAGGCTTGGTTCTACTTGGGGGTGATCCATAGGGACGAAGGACGAATGGCTGATGCTATAGACTGCTTCCAGGCAGCAGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGTATTCTCTAG 2127 43.96 MTSSADEDERDPALESGESEEGIVVREVCANGISIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCIAEKTPPKKGRARPESQHAVSQHAANLVLEAIYLKVKSLQKLGRVNEAADECTSVLDAVEKIFQQGIPDGQVDGRLQETVSQAVELLPELWKQAGCFQDAISAYRRALLNQWNLSSESWARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMLLVKKCYLGKIKWDPSVMEHLIFALSLCSQTSVLAKQLEEVMPGVYRRVDRWKSLALCYCAAGQNKVALNLLRKSLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAMNNSIGDEEHLKGVGLRLLGLCLGKQAKMSSSDFERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKISQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKLNEFEVWNGLANLYSSLSYWKDAEICLGKAKELKEFSPEVLHTEGLMCEGREKVQEALAAYINALLLEPSYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEESDPIESFSSIL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 106531331 106538597 - Tan0003132.1 Tan01g4174 741598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4174 708 MobiDBLite consensus disorder prediction 1 21 - -
Tan01g4174 708 PANTHER PROTEIN NPG1 18 706 IPR043376 -
Tan01g4174 708 ProSiteProfiles TPR repeat profile. 666 699 IPR019734 GO:0005515(InterPro)
Tan01g4174 708 SMART tpr_5 562 595 IPR019734 GO:0005515(InterPro)
Tan01g4174 708 SMART tpr_5 316 349 IPR019734 GO:0005515(InterPro)
Tan01g4174 708 SMART tpr_5 666 699 IPR019734 GO:0005515(InterPro)
Tan01g4174 708 SMART tpr_5 596 629 IPR019734 GO:0005515(InterPro)
Tan01g4174 708 SMART tpr_5 472 505 IPR019734 GO:0005515(InterPro)
Tan01g4174 708 Gene3D Tetratricopeptide repeat domain 247 544 IPR011990 GO:0005515(InterPro)
Tan01g4174 708 Gene3D Tetratricopeptide repeat domain 40 237 IPR011990 GO:0005515(InterPro)
Tan01g4174 708 Gene3D Tetratricopeptide repeat domain 649 704 IPR011990 GO:0005515(InterPro)
Tan01g4174 708 FunFam NPG1 553 702 - -
Tan01g4174 708 SUPERFAMILY TPR-like 436 697 IPR011990 GO:0005515(InterPro)
Tan01g4174 708 Pfam Tetratricopeptide repeat 39 91 - -
Tan01g4174 708 Pfam Tetratricopeptide repeat 650 693 - -
Tan01g4174 708 Gene3D Tetratricopeptide repeat domain 548 648 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4174 Tan-Chr1:106531331 Tan07g2188 Tan-Chr7:73379230 8.40E-168 dispersed
Tan01g4174 Tan-Chr1:106531331 Tan01g4175 Tan-Chr1:106531331 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4174 K21843 - csv:101206641 1294.26