Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4188 ATGAAGTACATTTCTGATGCAAGCTTCACAGAATCTGGAGTAAGTAAGAGCATATCATCAGATTTCAACACTACCACTCTTCCACAGCAATTCTGGTATGTTAGAAGCTTTCCTGAAGGGAAGAGGAACTGTTACACCATAAAGCTTGCTCAAGGTAAAGGTTTCAAGTATTTGATCAGAGCGAGTTTCATGTATGGAGACTATGACAGTGAAGGTAAAGCGCCGGTTTTTGATCTGTACATGGGAATTAATAAATGGGATTCGGTAGTACTGAGCAATGAATCCAGTATCACAACCAAAGAAGTTATACATACACTTCCTACATCTTCCGTATGCATATGTCTGGTGAATACTGGCTTTGGATCACCTTTTATTTCAGCATTGGAGTTTAGACTTTTGAAAAATGCTAGTTATGTTACCGATTCTGAATTTTTAGCTCTCCATAGACGGTTGGATGTAGGATCGACTACCAACAAAACTGTTAGGTACCAGGACGATTTTGTTGATCGGATTTGGTCACCCTTTAACTTTCCTCATTACAAAATTATAAGCACTTCATCCACAGTTGATTTAGGAAATAGCAACAGTTATAATTTACCAAGAATTGTAATGAGCACTACTATCACAACCGATAATGCCAGTGCTCCTCTAGAATTTCACTGGGTTCCTGAAGATCCCAGTGCCAAATTTCACATATTCTTGCACTTTGCTGATTTGGAAAAGCTCCAACCCAACCAATCGAGGGAATTTAACATCTTTCAGAATGAGGATCATTTTCATGGGCCTTTTTCTCCTGATTACTTGCAGTCAACTACATTGTTTAGCACAAGCCCAATGAGTGGAGAAACTATTGCATTTAAATTTTTAAAAACTAATACATCAAATCTTCCACCCATCCTCAATGCTCTTGAAATCTACAGGGTGCTAGATGATACATCAGAATCGCGCACTGATGAGCAGGACGTTAAGGCTCTGGTGAACATCAAATCATTTTACGGAGTGAGAAAGAATTGGCAGGGTGATCCATGCCTGCCAAAATCCTTCTTGTGGCATGGTCTTAATTGTAGCTATGATGACCAGAGTCCTAGTAGAATCACCTCTTTGGACTTATCTTCGAGTGGATTGGTGGGGGAAATAGCTACTTCTGTATCCGAGCTCACATCATTACAATATTTGGATTTATCCAACAATAACTTGAGTGGACCGGTGCCTGTTTTTCTATCTGAGTTGCACTCCTTGAAAGTTTTAGACTTGAGGGACAACCCACTTCTTGGTTCTATACCAAACGAACTCATGGAAAGATCAAAAAATGGATCCCTTACACTAAGGGTTGGGGGAGATGCTGAATTTTGTGCTTCATCTTCTTGCCAAAAGAAGAAAAAGAGTTTCACTATTCCAATTGTAGCAACAGTTTCATCATTGCTGGTCCTCTTAGCTGCAATAGCCGTCTGGATTATATTATGGAGAAAACGAGCTCAAAAACAGTCCGTCATAAGACTCGGATCACTAGAGCCAAAAAAACAGCAGCTATCTTACTCACAAATTCAGCGTATGACAAACAACTTTGAGACGAAAATCGGGGAAGGAGGATTTGCAAAAGTATTCCTTGGTTACTTGGATAACACTCAAGTTGCTGTGAAGGTCCTCAAGTCATCGGTTCAAGGCTATAAAGAATTTGAAGCAGAGGTTAAACTTTTGCTGAGAATTCATCATACAAACTTGACTAGCCTTGTTGGATACTGCTACGAAAAGACCAACCTGGTTCTCATTTATGAGTACATAAATAATGGCAACTTAAAAGAACATCTATTAGGCGGAAATGTTCGAGTTCTCAGTTGGGAGGAAAGGATGCAAATAGCGGTCGATGCAGCGCAAGGTTGA 1881 39.82 MKYISDASFTESGVSKSISSDFNTTTLPQQFWYVRSFPEGKRNCYTIKLAQGKGFKYLIRASFMYGDYDSEGKAPVFDLYMGINKWDSVVLSNESSITTKEVIHTLPTSSVCICLVNTGFGSPFISALEFRLLKNASYVTDSEFLALHRRLDVGSTTNKTVRYQDDFVDRIWSPFNFPHYKIISTSSTVDLGNSNSYNLPRIVMSTTITTDNASAPLEFHWVPEDPSAKFHIFLHFADLEKLQPNQSREFNIFQNEDHFHGPFSPDYLQSTTLFSTSPMSGETIAFKFLKTNTSNLPPILNALEIYRVLDDTSESRTDEQDVKALVNIKSFYGVRKNWQGDPCLPKSFLWHGLNCSYDDQSPSRITSLDLSSSGLVGEIATSVSELTSLQYLDLSNNNLSGPVPVFLSELHSLKVLDLRDNPLLGSIPNELMERSKNGSLTLRVGGDAEFCASSSCQKKKKSFTIPIVATVSSLLVLLAAIAVWIILWRKRAQKQSVIRLGSLEPKKQQLSYSQIQRMTNNFETKIGEGGFAKVFLGYLDNTQVAVKVLKSSVQGYKEFEAEVKLLLRIHHTNLTSLVGYCYEKTNLVLIYEYINNGNLKEHLLGGNVRVLSWEERMQIAVDAAQG 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 106640172 106647342 + Tan0007936.3 Tan01g4188 741612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4188 626 FunFam Leucine-rich repeat receptor-like kinase 320 452 - -
Tan01g4188 626 Gene3D Ribonuclease Inhibitor 320 442 IPR032675 -
Tan01g4188 626 ProSiteProfiles Protein kinase domain profile. 520 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4188 626 SUPERFAMILY L domain-like 341 433 - -
Tan01g4188 626 Pfam Malectin-like domain 1 308 IPR024788 -
Tan01g4188 626 Pfam Protein tyrosine and serine/threonine kinase 522 626 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4188 626 Pfam Leucine rich repeat 364 423 IPR001611 GO:0005515(InterPro)
Tan01g4188 626 PANTHER OS07G0107800 PROTEIN-RELATED 2 624 - -
Tan01g4188 626 Gene3D Transferase(Phosphotransferase) domain 1 489 626 - -
Tan01g4188 626 PRINTS Leucine-rich repeat signature 389 402 - -
Tan01g4188 626 PRINTS Leucine-rich repeat signature 410 423 - -
Tan01g4188 626 ProSitePatterns Protein kinases ATP-binding region signature. 526 547 IPR017441 GO:0005524(InterPro)
Tan01g4188 626 SUPERFAMILY Protein kinase-like (PK-like) 502 626 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4186 Tan-Chr1:106640172 Tan01g4188 Tan-Chr1:106640172 3.80E-242 dispersed
Tan01g4188 Tan-Chr1:106640172 Tan04g2709 Tan-Chr4:86577394 9.40E-147 dispersed
Tan01g4187 Tan-Chr1:106640172 Tan01g4188 Tan-Chr1:106640172 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67115 PF12819 Malectin_like 6.80E-102 CL0202 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4188 - - - 0.0