Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4237 ATGGCCACCAAAAAAAAAAAAAATCCACCTCCTTCCTATAAAAATCCACCTCCATCCTCCACTTTTCCCAATCATCAAACACTCCAATTCGCCTTTTTCCTCATCGCTTTAGTTAACTTCCAGATCTCTTCAATGGCGAAAGCAGCCGCTCTCTCCTTTTTGCTTCTGTTCCTCTCCTTCCTCTCAGGAGATTTGCCGGTAGTTAATGGAGATCAGAAGACGTGGTGCGTTGCGAGGCCTTCGTCGGATCAAGCGACGCTGTTAGCGAATATTAATTACGCTTGTTCGCAAGTGGATTGCAGGATTATGCAAAGAGGATGCCCCTGCTTTTATCCTGATAATCTGGTCAACCATGCCTCCATTGCTATGAATCTCTATTACCATTCGCGAGGGAAGAATCAGTGGAACTGTGATTTCAGAGGCTCTGCTCTCATTGTCATCACTGATCCAAGTTATGGGAACTGCCTTTACCCTTGA 477 45.28 MATKKKKNPPPSYKNPPPSSTFPNHQTLQFAFFLIALVNFQISSMAKAAALSFLLLFLSFLSGDLPVVNGDQKTWCVARPSSDQATLLANINYACSQVDCRIMQRGCPCFYPDNLVNHASIAMNLYYHSRGKNQWNCDFRGSALIVITDPSYGNCLYP 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107186096 107187286 - Tan0010115.1 Tan01g4237 741661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4237 158 Gene3D - 69 155 - -
Tan01g4237 158 PANTHER BETA-1,3 GLUCANASE 51 158 IPR044788 -
Tan01g4237 158 Pfam X8 domain 74 143 IPR012946 -
Tan01g4237 158 SMART X8_cls 74 157 IPR012946 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4237 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4237 Tan-Chr1:107186096 Tan09g2050 Tan-Chr9:71001486 6.30E-15 dispersed
Tan01g4237 Tan-Chr1:107186096 Tan01g4238 Tan-Chr1:107186096 3.90E-81 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g2 . . . . . . . . . . Cma01g01278 . Car01g01093 Car09g00605 Sed04g2513 Cpe06g00537 . Bhi09g03588 Tan01g4237 Cmetu07g0669 . Hepe01g1479 Mch11g0969 . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01331 Cmo09g00669 . . . . . . . . . . . . . . . . . . . . . Csa04g00829 . .
Vvi19g8 . . . . . . . . . . Cma01g01278 . Car01g01093 . Sed04g2513 . Cpe02g00647 Bhi09g03588 Tan01g4237 Cmetu07g0669 . Hepe01g1479 Mch11g0969 . Cla11g01671 Cam11g1737 Cec11g1763 Cco11g1764 Clacu11g1896 Cmu11g1707 Cre11g2121 . . Cone14ag1013 . Lsi04g01965 Csa04g02244 . . . . . . Bpe11g00430 . . . . Cmo01g01331 Cmo09g00669 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007416 1 1 0 1 2 0 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 2 2 34