Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4242 ATGACTCCTTTTCTTGTTCTAAGCAAAAGGAATAGAACGAAGATTATGCCTTTGACCGCCTTACATGAAGCTGATTTAGGTTCCAGCCCTGTTAGTTCTTCTTCTGGGAATGAAGTTCCACACGAATATCTAGACATTGATTTTCCTATGGAAAAATGGGTTCACATTGGATGTGAGGTCTCCACCGATTTTGTCAGGCTGCATATTGATGGGAAAATGGTTGGAGAAAAGCTTATGTCATCTTCACTCAGTGAAGATGCCATTCCAAGGGGGACGGGGCGCATTGTTTTAGGCAACAATGGTGAAGACAACAGCCTGCAGGGCTATGTTCATAATGCAAAAGTTTTGCCTTCGGTCTCATTGATCAGGGATCATTTTGCTGAGGACCTACCTGTTAAATTATTTATCGACAACTCTTCTACCATGGAGATTGAAGAAGGCAGTGATGGCGTCTGGAATATAGTTGGTGGCAAGCCATCTTGTCGTAGAAATTTTTCGTTGGATGTTATGCTGTTGGATTCCTCCAGTCAGCCTGTTCTGAAGGAACTCGAGGTTGTTGCCTCCCTCATCTATGCTGAAAGTGGGAAAGCTGTGGAGAAGTCAGGTGATGAAGAAGCTCCCCTTTTGGCAAGCTATGATGGTGTTGAATTTGCTTCCAGTGACAGACCAAGTAAACTGTTGCATGGGCGTGCATCCTTTAAGCTAAAAATATCTCAGCTATCGTCTAAATGTGATAACAAGCTCTTCCGCATTAGATTTTGTATACCTAAAGTTGAGGGGTATCCCTTCTTCGAGGCTCTCTCTTCTCCAATTCGTTGCATCTCAAGGAGTCGAACTACTCGTATGTCAACTTTGATGTGGAAAAGATCTGCCATCCATGCACTTGATGGATCTCGATCATCTGGTTTGGACAATGGGACCTCAGAACATGAGCATGTTTCAGTAGATGAAGAAAAACCAAGTCCACTATTGAAGAGGATTAAATTGGGACAAGATAGAGTTTTACCAACCTCCCATGATGATCCTGCATTAGGGCAACCAGATGAGGAATGCAACTCTCATTCTTTTACTACCAATGAGGCTGAAAATGGATTTGGCACAAATTTAACAGAAAGACCCAAAAATAATGGATCAACAAGAGCCTCCCCATCGGACACCGGGAGCACTGAAGCCAGACATTTGGCTTCAAATGGAACTACAACCAGTGGAAATCTGATATCAGATGTGAACATTTTCAAATATTGCCTAGTAGGTTTATCTGAGAGGTCACTTCTGCTCAAGGAGATTGCAACCTCTGTGTCGCAGGAAGAAGTTTTGGAATTTGCCGACCATGTTTCCCTATATTCTGGATGTTTACACCACAGGCATCAAATACTAATGTCAAGAAAATTAATAGAAGAGGGAACACAAGCTTGGAATTCAATCTCGCAAAACAAGCATCATGTTCAATGGGAGAGTGTTGTTTTTGAGATTGAAGAGCAATTCATGAGAATTTCTGGCTGCAGCTCTAGATCTCTCACTCAGCAGGACTTCGAGTTGCTGAGGAGAATTTCTGGTTGTCAAGAGTATCTAGCCCAAGAGAACTTCGAGAGAATGTGGTGTTGGTTATATCCTGTAGCTTTTACTTTATCCAGACAATGGATAAGTGCAATGTGGAGTTCTTTATCACCCAAGTGGATTGAAGGATTCATTACCAAGGAAGAAGCTGAATTATCACTTCAAAGTCCAACGGGTCTTCAAGAGCCTGGGACGTTTATTCTTCGATTTCCCACTTCAAGAAGCTGGCCTCATCCTGATGCTGGTAGCTTGGTAGTTACCTATGTTGGCAACGATTACGCTCTTCATCACAGACTTCTTACACTTGATCGTATTTTCAGTTCTGCTGAAGGAGAGAAGAATATGAGAAGTCTTCAGGACATGCTTCTAGCAGAACCCGAGCTCTCTCGATTGGGAAGGACAATTCGAAGTCACTGA 1974 42.71 MTPFLVLSKRNRTKIMPLTALHEADLGSSPVSSSSGNEVPHEYLDIDFPMEKWVHIGCEVSTDFVRLHIDGKMVGEKLMSSSLSEDAIPRGTGRIVLGNNGEDNSLQGYVHNAKVLPSVSLIRDHFAEDLPVKLFIDNSSTMEIEEGSDGVWNIVGGKPSCRRNFSLDVMLLDSSSQPVLKELEVVASLIYAESGKAVEKSGDEEAPLLASYDGVEFASSDRPSKLLHGRASFKLKISQLSSKCDNKLFRIRFCIPKVEGYPFFEALSSPIRCISRSRTTRMSTLMWKRSAIHALDGSRSSGLDNGTSEHEHVSVDEEKPSPLLKRIKLGQDRVLPTSHDDPALGQPDEECNSHSFTTNEAENGFGTNLTERPKNNGSTRASPSDTGSTEARHLASNGTTTSGNLISDVNIFKYCLVGLSERSLLLKEIATSVSQEEVLEFADHVSLYSGCLHHRHQILMSRKLIEEGTQAWNSISQNKHHVQWESVVFEIEEQFMRISGCSSRSLTQQDFELLRRISGCQEYLAQENFERMWCWLYPVAFTLSRQWISAMWSSLSPKWIEGFITKEEAELSLQSPTGLQEPGTFILRFPTSRSWPHPDAGSLVVTYVGNDYALHHRLLTLDRIFSSAEGEKNMRSLQDMLLAEPELSRLGRTIRSH 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107209875 107215444 - Tan0017584.2 Tan01g4242 741666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4242 657 ProSiteProfiles Src homology 2 (SH2) domain profile. 559 641 IPR000980 -
Tan01g4242 657 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 37 650 IPR001217 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0007165(InterPro)
Tan01g4242 657 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 119 IPR013320 -
Tan01g4242 657 MobiDBLite consensus disorder prediction 305 326 - -
Tan01g4242 657 Gene3D SH2 domain 545 655 IPR036860 -
Tan01g4242 657 MobiDBLite consensus disorder prediction 350 400 - -
Tan01g4242 657 MobiDBLite consensus disorder prediction 296 400 - -
Tan01g4242 657 SUPERFAMILY SH2 domain 556 621 IPR036860 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4242 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4241 Tan-Chr1:107209875 Tan01g4242 Tan-Chr1:107209875 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g12 . . . . Bpe09g00273 . . Bma13g00915 . . Cma01g01277 . Car01g01092 . . . Cpe02g00648 Bhi09g03581 Tan01g4242 . . . . . . . . . . . . . . . . Lsi04g01968 Csa04g02247 . . . Blo10g00716 . Bda12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26550 None None None None Tan TF