Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4246 ATGGATTCCCTCCATGGCTTACCTCCCCTCAAAAGACTCAGAATCCTTCAAGAACAAGAACGAAAGCGGCAACAAGAGGATCAATCGCTCGATTCTTGTTCCCTCCCAGCAAAGAAGCGAAAGGAGTCTCGTGATTCATCATCCCTCGTTCCTGACGCCACTTTGCCCCACAGAACCGCCATTTCCGCCTCTCCTTACTTCTTGCCGACGAAGAAACGAGTGTGGGCGCTTCGTCCTGATTTCGCCCCTGAATCTCTGGATCTCAATGTTGAATACAAGCCACCTCCGGAGGAAGAATTGGTTTCAAAAACAGAAACAGAGAGAGAGAAAAAGGAGAAGGAAGAGGATAAGAAAAAGGAGAAGGAAAAGGAAATTTCTGATGTTGAGATTGAGAATCAAGTGATTGAAGCAATCCAAGAAGAAGATGAAGATGAAGATAAAGATGAAGATGATGGGATCCTCTGTGCGATTTGTCAAAGCACAGATGGGGATCCTTCGGATCCAATCGTGTTCTGCGATGGATGTGATTTGATGGTACATGCTTCGTGTTATGGTAATCCTTTGGTGAAGAGCGTACCCGAAGGTGATTGGTTCTGTATCCAATGCTTAGCGTCTTCGTCTTCCAAGACGGAGAAGAAAGTTTCTGAAACTCCACTTTCATGCTGCCTTTGCCCTCTCAAAGGAGGGGCTATGAAACCGACGAACGATGGCCGATGGGCTCATATTGTTTGTGGCCTCTTTGTTCCTGAGGTGTTCTTTGAGGACCCAGATGGCAGAGAAGGGATTGATTGCTCAAAGATTCTGAAGAGGAGATGGAAAACCAAATGTTACATCTGCAAAACTTCTAGAGGTTGTGCCATTGATTGTTCAGAGCCTAAGTGCAGTTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTTTGTATTGAGTACCAAGAAGGAAGGAGATCTGGTGCTATTGTAGCTGGGTTCTGCAGGAATCATACTGACTTGTGGAAGAAGCAACAACTAACAGGGAAGTTTAAGATTGTGGCCAGAGATGAAGGTAAGTTGTAG 1059 45.42 MDSLHGLPPLKRLRILQEQERKRQQEDQSLDSCSLPAKKRKESRDSSSLVPDATLPHRTAISASPYFLPTKKRVWALRPDFAPESLDLNVEYKPPPEEELVSKTETEREKKEKEEDKKKEKEKEISDVEIENQVIEAIQEEDEDEDKDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSVPEGDWFCIQCLASSSSKTEKKVSETPLSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSKILKRRWKTKCYICKTSRGCAIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107247095 107248804 - Tan0006917.1 Tan01g4246 741670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4246 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 332 IPR013083 -
Tan01g4246 352 MobiDBLite consensus disorder prediction 1 63 - -
Tan01g4246 352 Pfam PHD-zinc-finger like domain 220 317 - -
Tan01g4246 352 ProSiteProfiles Extended PHD (ePHD) domain profile. 218 330 IPR034732 -
Tan01g4246 352 SMART PHD_3 275 330 IPR001965 -
Tan01g4246 352 SMART PHD_3 154 203 IPR001965 -
Tan01g4246 352 Coils Coil 101 138 - -
Tan01g4246 352 PANTHER PHD FINGER PROTEINS 18 330 IPR050701 GO:0006357(PANTHER)
Tan01g4246 352 MobiDBLite consensus disorder prediction 14 47 - -
Tan01g4246 352 MobiDBLite consensus disorder prediction 91 125 - -
Tan01g4246 352 CDD PHD_BRPF_JADE_like 154 202 - -
Tan01g4246 352 Pfam PHD-finger 155 202 IPR019787 -
Tan01g4246 352 SUPERFAMILY FYVE/PHD zinc finger 139 210 IPR011011 -
Tan01g4246 352 ProSiteProfiles Zinc finger PHD-type profile. 152 205 IPR019787 -
Tan01g4246 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 215 IPR013083 -
Tan01g4246 352 MobiDBLite consensus disorder prediction 87 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4246 Tan-Chr1:107247095 Tan06g1666 Tan-Chr6:28781744 5.30E-30 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26551 PF13832 zf-HC5HC2H_2 1.70E-29 CL0390 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4246 K11380 - csv:101203744 565.844