Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g4246 | ATGGATTCCCTCCATGGCTTACCTCCCCTCAAAAGACTCAGAATCCTTCAAGAACAAGAACGAAAGCGGCAACAAGAGGATCAATCGCTCGATTCTTGTTCCCTCCCAGCAAAGAAGCGAAAGGAGTCTCGTGATTCATCATCCCTCGTTCCTGACGCCACTTTGCCCCACAGAACCGCCATTTCCGCCTCTCCTTACTTCTTGCCGACGAAGAAACGAGTGTGGGCGCTTCGTCCTGATTTCGCCCCTGAATCTCTGGATCTCAATGTTGAATACAAGCCACCTCCGGAGGAAGAATTGGTTTCAAAAACAGAAACAGAGAGAGAGAAAAAGGAGAAGGAAGAGGATAAGAAAAAGGAGAAGGAAAAGGAAATTTCTGATGTTGAGATTGAGAATCAAGTGATTGAAGCAATCCAAGAAGAAGATGAAGATGAAGATAAAGATGAAGATGATGGGATCCTCTGTGCGATTTGTCAAAGCACAGATGGGGATCCTTCGGATCCAATCGTGTTCTGCGATGGATGTGATTTGATGGTACATGCTTCGTGTTATGGTAATCCTTTGGTGAAGAGCGTACCCGAAGGTGATTGGTTCTGTATCCAATGCTTAGCGTCTTCGTCTTCCAAGACGGAGAAGAAAGTTTCTGAAACTCCACTTTCATGCTGCCTTTGCCCTCTCAAAGGAGGGGCTATGAAACCGACGAACGATGGCCGATGGGCTCATATTGTTTGTGGCCTCTTTGTTCCTGAGGTGTTCTTTGAGGACCCAGATGGCAGAGAAGGGATTGATTGCTCAAAGATTCTGAAGAGGAGATGGAAAACCAAATGTTACATCTGCAAAACTTCTAGAGGTTGTGCCATTGATTGTTCAGAGCCTAAGTGCAGTTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTTTGTATTGAGTACCAAGAAGGAAGGAGATCTGGTGCTATTGTAGCTGGGTTCTGCAGGAATCATACTGACTTGTGGAAGAAGCAACAACTAACAGGGAAGTTTAAGATTGTGGCCAGAGATGAAGGTAAGTTGTAG | 1059 | 45.42 | MDSLHGLPPLKRLRILQEQERKRQQEDQSLDSCSLPAKKRKESRDSSSLVPDATLPHRTAISASPYFLPTKKRVWALRPDFAPESLDLNVEYKPPPEEELVSKTETEREKKEKEEDKKKEKEKEISDVEIENQVIEAIQEEDEDEDKDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSVPEGDWFCIQCLASSSSKTEKKVSETPLSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSKILKRRWKTKCYICKTSRGCAIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKL | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 107247095 | 107248804 | - | Tan0006917.1 | Tan01g4246 | 741670 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g4246 | 352 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 216 | 332 | IPR013083 | - | |
Tan01g4246 | 352 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Tan01g4246 | 352 | Pfam | PHD-zinc-finger like domain | 220 | 317 | - | - | |
Tan01g4246 | 352 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 218 | 330 | IPR034732 | - | |
Tan01g4246 | 352 | SMART | PHD_3 | 275 | 330 | IPR001965 | - | |
Tan01g4246 | 352 | SMART | PHD_3 | 154 | 203 | IPR001965 | - | |
Tan01g4246 | 352 | Coils | Coil | 101 | 138 | - | - | |
Tan01g4246 | 352 | PANTHER | PHD FINGER PROTEINS | 18 | 330 | IPR050701 | GO:0006357(PANTHER) | |
Tan01g4246 | 352 | MobiDBLite | consensus disorder prediction | 14 | 47 | - | - | |
Tan01g4246 | 352 | MobiDBLite | consensus disorder prediction | 91 | 125 | - | - | |
Tan01g4246 | 352 | CDD | PHD_BRPF_JADE_like | 154 | 202 | - | - | |
Tan01g4246 | 352 | Pfam | PHD-finger | 155 | 202 | IPR019787 | - | |
Tan01g4246 | 352 | SUPERFAMILY | FYVE/PHD zinc finger | 139 | 210 | IPR011011 | - | |
Tan01g4246 | 352 | ProSiteProfiles | Zinc finger PHD-type profile. | 152 | 205 | IPR019787 | - | |
Tan01g4246 | 352 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 215 | IPR013083 | - | |
Tan01g4246 | 352 | MobiDBLite | consensus disorder prediction | 87 | 125 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g4246 | Tan-Chr1:107247095 | Tan06g1666 | Tan-Chr6:28781744 | 5.30E-30 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26551 | PF13832 | zf-HC5HC2H_2 | 1.70E-29 | CL0390 | Tan | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g4246 | K11380 | - | csv:101203744 | 565.844 |