Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4254 ATGCCTGGGAATAAGTATAACGGTAACTCAAACGATATTTCGGACCATATACCAGGTCGAGTGGAAAGGCTTTTGCGAGAGAGAAAGCTAAGGAAAAGCAGTAAGGATTCATATTACGAGGTAAACGACTATAGTAAGGAGTCTGAACTAATTGAAAATGATTCTCGTTTGAAAGAAGAAGAAAACGTCGGAATTTCCTGTAAATTTTCGGAAGCTTCTGTAGCTTCAAGGGCCTTTGCTGAAGGATGTGACAAGCAAGAGGGCAAGCCTCCCAGACAACGGTTGCTGGTTGTGGCCAATAGGCTGCCCGTCTCTGCAGTTAGGAGGGGTGAAGATTCCTGGTCTCTGGAGATTAGTGCTGGAGGTCTAGTGAGTGCACTTCTGGGCGTGAATGAGTTTGAAGCGAGATGGATTGGTTGGGCTGGTGTAAATGTGCCAGATGAGGTAGGACAAAAGGCACTGACGGAAGCTTTGGCTGAAAAGAGGTGTATACCTGTTTTCCTTGATGAAGAGATTGTTCATCAATACTATAATGGTTATTGCAACAACATTTTATGGCCTTTGTTTCATTACCTTGGCCTTCCTCAAGAAGATCGTCTTGCCACCACCCGTAGCTTTCAGTCTCAGTTTGCCGCATACAAGAAAGCAAACCAAATGTTTGCTGATGTAGTTAACAAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCAAAATGTCTGAAAGAACATAATCGTAAGATGAAAGTCGGCTGGTTTCTCCATACACCTTTTCCTTCTTCTGAAATCCACAGAACACTTCCGTCCCGATCAGAGCTTCTGCGCTCAGTACTTGCTGCTGATCTGGTTGGCTTTCACACATATGATTATGCTCGTCATTTCGTAAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCGGAAGGAGTTGAGGATCAAGGAAAGCTAACACGAGTTGCTGCATTCCCTATTGGTATAGACTCTGAACGATTCATACGTGCCCTCAAGACTCCTGAAGTCCAAGAACGTATTGAAGAGTTAAAGGAAAGATTCAGAGGTCGAAAGGTAATGTTAGGTGTTGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATATTAGCATTTGAAAAATTCTTGGAGGAAAACACTTATTGGCGTGATAAAGTTGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTGCCAGAATACCAAAAGCTTACAAGCCAAGTTCATGAAATAGTTGGACGCATTAATGGGAGATTTGGAACGTTGACAACCGTGCCTATACATCATCTGGATCGCTCCCTTGATTTTCATGCATTATGTGCGCTGTATGCTGTAACTGATGTAGCACTTGTCACATCTTTGAGGGATGGAATGAATCTCGTGAGTTATGAGTTCGTTGCTTGCCAGGATGCAAAGAAAGGGGTTTTAATTCTTAGTGAGTTTGCTGGTGCTGCACAATCCCTTGGTGCTGGAGCACTCTTGGTCAACCCCTGGAACATAACAGAAGTTGCAAAATCAATTGATCGAGCATTAAATATGGATGCTGAAGAAAGAGAAAAGCGCCATAGGCATAATTTTCTCCATGTGACAACACACACTGCCCAGGAATGGGCAGAAACTTTTGTGAGTGAACTTAACGATACAGTAGTTGAAGCTGAACTGAGGATTAGACAATCTCCGCCCCCGCTTCCATTTGAAAATGCAATTAAACGTTATGAGCAATGCACTAATCGATTACTTATACTGGGGTTCAATTCAACATTAACTGAACCAGTGGATACTCCCGAGAGAAGAGGCGATCAGATTAGAGAAATGGACCTGAAACTACACCCGGATTTGAAAGAACCATTGATGGCAATTTGCAACGACCCAAATACGACAGTAGTCATCCTCAGTGGGAGTGATAGAACGGTCTTGGATGATAACTTTGGGGAGTATGACATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTCACAAGGGGGGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTTTGAGCTCCGTGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTTCAAGCAAGGGATATGCTGCAGCATTTATGGACAGGTCCAATTTCTAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCCGTTGAGGTGCGAGCTGTTGGCGTTACCAAGGGATCAGCAATTGATCGAATATTGGGAGAAATAGTTCACAGCAAGTCCATGACGACTCCAATAGACTATGTCTTGTGTGTAGGCCATTTTCTTGGGAAGGATGAAGATGTCTACACCTTCTTTGAGCCTGAGCTTCCATCGGATACAATAGGCATGGCAAGAGCCAAGGGAACCGATGGGCTTAAGTTAACTGGTGAGAGAAGATCTTCCATTAAAGTTCCTGCAAGTAGGAATGGATCGAAATCGCCTCACAATAAGGTACGGTCAAATTCGGAGAAGAAAACTTCAAATCATAACTGTGCAAACGGTCGCAAACCATCACCGGAGAAGATTCAATGGAATGTGCTTGATCTGAAGGCTGAGAACTACTTCTCATGTGCTGTTGGACGATCTCGAACGAATGCTCGATATATGCTCGGATCATCAGATGATGTGGTGACATTCCTAAAGGAGTTGGCAAGTGCAAATGAATTTTCTTGA 2784 43.39 MPGNKYNGNSNDISDHIPGRVERLLRERKLRKSSKDSYYEVNDYSKESELIENDSRLKEEENVGISCKFSEASVASRAFAEGCDKQEGKPPRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVNEFEARWIGWAGVNVPDEVGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEHNRKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSERFIRALKTPEVQERIEELKERFRGRKVMLGVDRLDMIKGIPQKILAFEKFLEENTYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKSIDRALNMDAEEREKRHRHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIRQSPPPLPFENAIKRYEQCTNRLLILGFNSTLTEPVDTPERRGDQIREMDLKLHPDLKEPLMAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMARAKGTDGLKLTGERRSSIKVPASRNGSKSPHNKVRSNSEKKTSNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRSRTNARYMLGSSDDVVTFLKELASANEFS 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107334470 107352679 - Tan0004977.1 Tan01g4254 741678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4254 927 SUPERFAMILY HAD-like 591 921 IPR036412 -
Tan01g4254 927 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 684 764 - -
Tan01g4254 927 FunFam Trehalose-6-phosphatase synthase S4 730 841 - -
Tan01g4254 927 CDD HAD_TPP 592 812 - -
Tan01g4254 927 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 93 562 - -
Tan01g4254 927 Gene3D Glycogen Phosphorylase B; 341 543 - -
Tan01g4254 927 CDD GT20_TPS 94 559 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Tan01g4254 927 Pfam Trehalose-phosphatase 616 824 IPR003337 GO:0005992(InterPro)
Tan01g4254 927 Gene3D Glycogen Phosphorylase B; 86 340 - -
Tan01g4254 927 MobiDBLite consensus disorder prediction 834 875 - -
Tan01g4254 927 Gene3D - 684 764 - -
Tan01g4254 927 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 84 923 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
Tan01g4254 927 Pfam Glycosyltransferase family 20 94 559 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Tan01g4254 927 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 86 340 - -
Tan01g4254 927 FunFam Alpha,alpha-trehalose-phosphate synthase 618 689 - -
Tan01g4254 927 Gene3D - 618 778 IPR023214 -
Tan01g4254 927 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 341 543 - -
Tan01g4254 927 MobiDBLite consensus disorder prediction 839 853 - -
Tan01g4254 927 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 94 559 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4254 Tan-Chr1:107334470 Tan01g4256 Tan-Chr1:107334470 0.00E+00 dispersed
Tan01g4254 Tan-Chr1:107334470 Tan01g4255 Tan-Chr1:107334470 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4254 K16055 - csv:101204478 1789.24