Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4268 ATGGCGACTGATCTACTTCCATTTCCAACCATTGTAGTTGCTTCCTTCCTTGTTTTTTGTACTGCTCTCGCTGCTCAAGCTCCAAGATTACCTCCTGATGAAACCGATGCTTTCTGGGCTGTAATGGGGGAATTGCAAAAGACGAAGTGGAATTTCAGTGTACGACCATGCAGTGAAGGCTTCGATGGCCATTCTAATTTCACACAAGATGATTATTATTTCTTTGTAAATAAAATCATCTGTAATTGCTCCTATGAGGATGCTACAGTTTGCCACGTCACCCATATATATCTCAAGTCCCAAAGTTTGGCAGGCAGACTTCCATCTCAACTCGTCGCCTTACCTTACCTGGAGGAACTCGATCTCACTCGAAACTATCTTAGCGGCCAAATTCCTCGCGAATGGGGCTCCACAAAGCTCGTCAGAATTTCTCTGCTCGGAAATCAACTGACGGGTTCGGTCCCAGACGAGATAGGAAACATCACTACTCTTACAGATTTGATCCTAGAATCCAATCACCTGTCAGGAAGCTTGCCTTCAACCCTTGGAAATTTGGTCAACTTGGAAAGATTAATTCTTTCCTCGAACAACTTCACTGGGGAGCTCCCGGCGTCTTTAGCAATGCTGACCTCTCTGACCGACTTCCGAATCGGAGACAGTAATTTTGTTGGACAAATACCTAGCTTCATTCAAAATTGGGCAAATATTAGTAGAATACAAATTCAAGCAAGTGGGTTGAGTGGGCCTATTCCTTCTGAAATTGGGCTTCTGAAAAACTTAATCCACCTGAGAATAAGTGACTTGAATGGAGCTTCATCACCTTTTCCGTCACTTAACAATTTGACTATTTTGAAAACTTTAATATTGAGAAATTGCAATATAACAGGAGTGCTGCCTGATAATTTTGATGGGATGAAGAATTTGAAGATCCTAGACCTCAGCTTTAACAAAATAAGTGGGCCTATTCCTCCCAGTTTCTATAGTCTTGTCCGGGTGGATGCAATATTTTTATCTGGAAACTTGCTAAATGGATCAGTGCCTGATTGGATGGCGCGTGAAGGAGAGAGCATTGATCTCTCTTATAATAAATTTACACACTCTACGACTACCGGCTGTCAATCACGAAACTTGAACCAATTCGCAAGCTCTTCACTTGACAATAATTCTAACCTTGTGTCTTGTTTGCCGAACCGCACTTGTGCCCGAGTTGAGTCCCGTCTCCATATAAATTGTGGTGGGAAGGAAGAAACCTTCGAGGGTGTTAAGTTTGAAGGAGATGAAAATACAGGCAAATCATCGCAGTTTTTCGCAAGTAAAACAAATTGGGCATTTAGCAATACTGGCACTTTTATTGACGATGATCGTACTACAGATGACTATATTGCCTTGAATTCATCTGCGTTGTCTATGACAAATGCCACACTCTATGAGACTGCTCGAATTTCTCCACTGTCTCTAACATACTATGTGTATTGTATGGAGAATGGAAACTACACGATAAGCCTCCATTTTGCAGAAATAATGTTTACCAATGATAGAAATTATAGCAGCCTTGGAAGACGCATTTTTGATGTTTTTGTGCAGGGGGAGCTGGTGCTGAAGGATTTTAATATTGTAGATCATGCAGGGGGTATAGGTAAAGCTGTCATAAAAAAGATTCCTGTCGCTATTACTAGTGGTACTTTGGAGATACGATTTTATTGGGCTGGGAAGGGGACAGTTGCTATCCCTGTAAGAGGAGTCTATGGTCCTCTAATTTCAGCCATTTCAGTAGATCCTGATTCATCAAAAGGTCGAACTGCCTTACCTGTAGGTGCAATTGTTGGAATTTCGGTTGCAGTGGCCTTCATTATCATTTTGGCTCTAGGAATTTTGTGGTGGAGAGGCTATCTTGGAAAGAAAAGTACACATCAGCAAGGTTTAGAGGGTCAAGATCTACTCATTGGTTCATTTACATTAAAGCAAATTCAAACGGCAACAAATAACTTTGATGCTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGTATTCTCTTGGATGGTACCATGATTGCAGTGAAGCAACTTTCTGCAAAGTCAAAACAAGGAAACCGAGAATTTGTGAATGAGATGGGCTTGATATCATCTGTAAAACACCCACATTTAGTTAAGCTTTATGGATGTTGTACCGAAGCAGATCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAAGCCCTCTTTGGACCTCAAGGATGTCAATTAAAATTGGATTGGGCAACAAGGCAAAAGATTTGTATTGGTATAGCCAAAGGTTTGGCTTTTCTTCATGAGGAGTCAAGATTGAAGATTGTTCACCGAGATATCAAAGGTACTAATGTATTGTTAGATAAAAATCTCAACCCAAAGATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAAGAAAATACTCACATAAGCACTCGGATTGCTGGAACATTGTGA 2490 40.64 MATDLLPFPTIVVASFLVFCTALAAQAPRLPPDETDAFWAVMGELQKTKWNFSVRPCSEGFDGHSNFTQDDYYFFVNKIICNCSYEDATVCHVTHIYLKSQSLAGRLPSQLVALPYLEELDLTRNYLSGQIPREWGSTKLVRISLLGNQLTGSVPDEIGNITTLTDLILESNHLSGSLPSTLGNLVNLERLILSSNNFTGELPASLAMLTSLTDFRIGDSNFVGQIPSFIQNWANISRIQIQASGLSGPIPSEIGLLKNLIHLRISDLNGASSPFPSLNNLTILKTLILRNCNITGVLPDNFDGMKNLKILDLSFNKISGPIPPSFYSLVRVDAIFLSGNLLNGSVPDWMAREGESIDLSYNKFTHSTTTGCQSRNLNQFASSSLDNNSNLVSCLPNRTCARVESRLHINCGGKEETFEGVKFEGDENTGKSSQFFASKTNWAFSNTGTFIDDDRTTDDYIALNSSALSMTNATLYETARISPLSLTYYVYCMENGNYTISLHFAEIMFTNDRNYSSLGRRIFDVFVQGELVLKDFNIVDHAGGIGKAVIKKIPVAITSGTLEIRFYWAGKGTVAIPVRGVYGPLISAISVDPDSSKGRTALPVGAIVGISVAVAFIIILALGILWWRGYLGKKSTHQQGLEGQDLLIGSFTLKQIQTATNNFDASNKIGEGGFGPVYKGILLDGTMIAVKQLSAKSKQGNREFVNEMGLISSVKHPHLVKLYGCCTEADQLLLVYEYMENNSLAQALFGPQGCQLKLDWATRQKICIGIAKGLAFLHEESRLKIVHRDIKGTNVLLDKNLNPKISDFGLAKLDEEENTHISTRIAGTL 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107419781 107446700 - Tan0018569.2 Tan01g4268 741692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4268 829 SUPERFAMILY L domain-like 89 365 - -
Tan01g4268 829 Pfam Leucine Rich Repeat 187 207 IPR001611 GO:0005515(InterPro)
Tan01g4268 829 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515(InterPro)
Tan01g4268 829 Pfam Leucine Rich Repeat 117 136 IPR001611 GO:0005515(InterPro)
Tan01g4268 829 Gene3D - 404 593 - -
Tan01g4268 829 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 36 202 - -
Tan01g4268 829 SMART serkin_6 663 829 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4268 829 Gene3D Ribonuclease Inhibitor 201 269 IPR032675 -
Tan01g4268 829 Gene3D Ribonuclease Inhibitor 270 389 IPR032675 -
Tan01g4268 829 Gene3D Transferase(Phosphotransferase) domain 1 739 829 - -
Tan01g4268 829 Pfam Malectin domain 407 589 IPR021720 -
Tan01g4268 829 SUPERFAMILY Protein kinase-like (PK-like) 647 828 IPR011009 -
Tan01g4268 829 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
Tan01g4268 829 ProSiteProfiles Protein kinase domain profile. 663 829 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4268 829 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 828 IPR051824 -
Tan01g4268 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4268 829 Gene3D Phosphorylase Kinase; domain 1 631 738 - -
Tan01g4268 829 Pfam Leucine rich repeat 284 342 IPR001611 GO:0005515(InterPro)
Tan01g4268 829 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 594 - -
Tan01g4268 829 Pfam Protein kinase domain 665 822 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4268 829 Gene3D Ribonuclease Inhibitor 64 200 IPR032675 -
Tan01g4268 829 FunFam Os07g0541700 protein 739 828 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4268 Tan-Chr1:107419781 Tan01g4270 Tan-Chr1:107453834 9.60E-248 dispersed
Tan01g4267 Tan-Chr1:107419781 Tan01g4268 Tan-Chr1:107419781 0.00E+00 tandem
Tan01g4268 Tan-Chr1:107419781 Tan01g4269 Tan-Chr1:107419781 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67121 PF11721 Malectin 1.50E-46 CL0202 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4268 - - - 0.0