Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4269 ATGGCGACTGATCTACTTCCATTTCCAACCATTGTAGTTGCTTCCTTCCTTGTTTTTTGTACTGCTCTCGCTGCTCAAGCTCCAAGATTACCTCCTGATGAAACCGATGCTTTCTGGGCTGTAATGGGGGAATTGCAAAAGACGAAGTGGAATTTCAGTGTACGACCATGCAGTGAAGGCTTCGATGGCCATTCTAATTTCACACAAGATGATTATTATTTCTTTGTAAATAAAATCATCTGTAATTGCTCCTATGAGGATGCTACAGTTTGCCACGTCACCCATATATATCTCAAGTCCCAAAGTTTGGCAGGCAGACTTCCATCTCAACTCGTCGCCTTACCTTACCTGGAGGAACTCGATCTCACTCGAAACTATCTTAGCGGCCAAATTCCTCGCGAATGGGGCTCCACAAAGCTCGTCAGAATTTCTCTGCTCGGAAATCAACTGACGGGTTCGGTCCCAGACGAGATAGGAAACATCACTACTCTTACAGATTTGATCCTAGAATCCAATCACCTGTCAGGAAGCTTGCCTTCAACCCTTGGAAATTTGGTCAACTTGGAAAGATTAATTCTTTCCTCGAACAACTTCACTGGGGAGCTCCCGGCGTCTTTAGCAATGCTGACCTCTCTGACCGACTTCCGAATCGGAGACAGTAATTTTGTTGGACAAATACCTAGCTTCATTCAAAATTGGGCAAATATTAGTAGAATACAAATTCAAGCAAGTGGGTTGAGTGGGCCTATTCCTTCTGAAATTGGGCTTCTGAAAAACTTAATCCACCTGAGAATAAGTGACTTGAATGGAGCTTCATCACCTTTTCCGTCACTTAACAATTTGACTATTTTGAAAACTTTAATATTGAGAAATTGCAATATAACAGGAGTGCTGCCTGATAATTTTGATGGGATGAAGAATTTGAAGATCCTAGACCTCAGCTTTAACAAAATAAGTGGGCCTATTCCTCCCAGTTTCTATAGTCTTGTCCGGGTGGATGCAATATTTTTATCTGGAAACTTGCTAAATGGATCAGTGCCTGATTGGATGGCGCGTGAAGGAGAGAGCATTGATCTCTCTTATAATAAATTTACACACTCTACGACTACCGGCTGTCAATCACGAAACTTGAACCAATTCGCAAGCTCTTCACTTGACAATAATTCTAACCTTGTGTCTTGTTTGCCGAACCGCACTTGTGCCCGAGTTGAGTCCCGTCTCCATATAAATTGTGGTGGGAAGGAAGAAACCTTCGAGGGTGTTAAGTTTGAAGGAGATGAAAATACAGGCAAATCATCGCAGTTTTTCGCAAGTAAAACAAATTGGGCATTTAGCAATACTGGCACTTTTATTGACGATGATCGTACTACAGATGACTATATTGCCTTGAATTCATCTGCGTTGTCTATGACAAATGCCACACTCTATGAGACTGCTCGAATTTCTCCACTGTCTCTAACATACTATGTGTATTGTATGGAGAATGGAAACTACACGATAAGCCTCCATTTTGCAGAAATAATGTTTACCAATGATAGAAATTATAGCAGCCTTGGAAGACGCATTTTTGATGTTTTTGTGCAGGGGGAGCTGGTGCTGAAGGATTTTAATATTGTAGATCATGCAGGGGGTATAGGTAAAGCTGTCATAAAAAAGATTCCTGTCGCTATTACTAGTGGTACTTTGGAGATACGATTTTATTGGGCTGGGAAGGGGACAGTTGCTATCCCTGTAAGAGGAGTCTATGGTCCTCTAATTTCAGCCATTTCAGTAGATCCTGATTCATCAAAAGGTCGAACTGCCTTACCTGTAGGTGCAATTGTTGGAATTTCGGTTGCAGTGGCCTTCATTATCATTTTGGCTCTAGGAATTTTGTGGTGGAGAGGCTATCTTGGAAAGAAAAGTACACATCAGCAAGGTTTAGAGGGTCAAGATCTACTCATTGGTTCATTTACATTAAAGCAAATTCAAACGGCAACAAATAACTTTGATGCTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGTATTCTCTTGGATGGTACCATGATTGCAGTGAAGCAACTTTCTGCAAAGTCAAAACAAGGAAACCGAGAATTTGTGAATGAGATGGGCTTGATATCATCTGTAAAACACCCACATTTAGTTAAGCTTTATGGATGTTGTACCGAAGCAGATCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAAGCCCTCTTTGGACCTCAAGGATGTCAATTAAAATTGGATTGGGCAACAAGGCAAAAGATTTGTATTGGTATAGCCAAAGGTTTGGCTTTTCTTCATGAGGAGTCAAGATTGAAGATTGTTCACCGAGATATCAAAGGTACTAATGTATTGTTAGATAAAAATCTCAACCCAAAGATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAAGAAAATACTCACATAAGCACTCGGATTGCTGGAACATTTGGATATATGGCACCAGAATATGCAACTCGTGGCTACTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATCGTGGCATTGGAAATAGTTAGTGGACGGAGCAACAATATATATCGCTCGAAGGATAAGTGTCTTTATCTTCTTGATTGGGTAACTTGA 2646 40.51 MATDLLPFPTIVVASFLVFCTALAAQAPRLPPDETDAFWAVMGELQKTKWNFSVRPCSEGFDGHSNFTQDDYYFFVNKIICNCSYEDATVCHVTHIYLKSQSLAGRLPSQLVALPYLEELDLTRNYLSGQIPREWGSTKLVRISLLGNQLTGSVPDEIGNITTLTDLILESNHLSGSLPSTLGNLVNLERLILSSNNFTGELPASLAMLTSLTDFRIGDSNFVGQIPSFIQNWANISRIQIQASGLSGPIPSEIGLLKNLIHLRISDLNGASSPFPSLNNLTILKTLILRNCNITGVLPDNFDGMKNLKILDLSFNKISGPIPPSFYSLVRVDAIFLSGNLLNGSVPDWMAREGESIDLSYNKFTHSTTTGCQSRNLNQFASSSLDNNSNLVSCLPNRTCARVESRLHINCGGKEETFEGVKFEGDENTGKSSQFFASKTNWAFSNTGTFIDDDRTTDDYIALNSSALSMTNATLYETARISPLSLTYYVYCMENGNYTISLHFAEIMFTNDRNYSSLGRRIFDVFVQGELVLKDFNIVDHAGGIGKAVIKKIPVAITSGTLEIRFYWAGKGTVAIPVRGVYGPLISAISVDPDSSKGRTALPVGAIVGISVAVAFIIILALGILWWRGYLGKKSTHQQGLEGQDLLIGSFTLKQIQTATNNFDASNKIGEGGFGPVYKGILLDGTMIAVKQLSAKSKQGNREFVNEMGLISSVKHPHLVKLYGCCTEADQLLLVYEYMENNSLAQALFGPQGCQLKLDWATRQKICIGIAKGLAFLHEESRLKIVHRDIKGTNVLLDKNLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYATRGYLTDKADVYSFGIVALEIVSGRSNNIYRSKDKCLYLLDWVT 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107419781 107446700 - Tan0018569.3 Tan01g4269 741693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4269 881 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 36 202 - -
Tan01g4269 881 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 879 IPR051824 -
Tan01g4269 881 Pfam Protein kinase domain 665 863 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4269 881 Gene3D - 404 593 - -
Tan01g4269 881 Gene3D Phosphorylase Kinase; domain 1 631 738 - -
Tan01g4269 881 SMART serkin_6 663 880 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4269 881 SUPERFAMILY L domain-like 89 365 - -
Tan01g4269 881 Gene3D Transferase(Phosphotransferase) domain 1 739 881 - -
Tan01g4269 881 Pfam Malectin domain 407 589 IPR021720 -
Tan01g4269 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4269 881 Gene3D Ribonuclease Inhibitor 203 269 IPR032675 -
Tan01g4269 881 Gene3D Ribonuclease Inhibitor 64 202 IPR032675 -
Tan01g4269 881 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 594 - -
Tan01g4269 881 Gene3D Ribonuclease Inhibitor 270 389 IPR032675 -
Tan01g4269 881 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
Tan01g4269 881 FunFam Lectin-domain containing receptor kinase A4.3 739 881 - -
Tan01g4269 881 Pfam Leucine Rich Repeat 117 136 IPR001611 GO:0005515(InterPro)
Tan01g4269 881 Pfam Leucine Rich Repeat 187 207 IPR001611 GO:0005515(InterPro)
Tan01g4269 881 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515(InterPro)
Tan01g4269 881 ProSiteProfiles Protein kinase domain profile. 663 881 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4269 881 SUPERFAMILY Protein kinase-like (PK-like) 647 868 IPR011009 -
Tan01g4269 881 Pfam Leucine rich repeat 284 342 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4267 Tan-Chr1:107419781 Tan01g4269 Tan-Chr1:107419781 0.00E+00 dispersed
Tan01g4269 Tan-Chr1:107419781 Tan01g4284 Tan-Chr1:107670892 2.50E-270 dispersed
Tan01g4268 Tan-Chr1:107419781 Tan01g4269 Tan-Chr1:107419781 0.00E+00 tandem
Tan01g4269 Tan-Chr1:107419781 Tan01g4270 Tan-Chr1:107453834 2.30E-276 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67122 PF00069 Pkinase 1.60E-45 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4269 - - - 0.0