Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4270 ATGTTAGAAATTAAAAATATAATCGTTGTTGCTTCACTCGTTGTTTCTTCAGTAATAGGCCTTGCTTTTGGATCTCCTCTATTGCCTCTCGAAGAAGTTGAAGGTTTAAAGCATGTGGGAGAGACATTGGAAAAGAGAGATTGGAATTTCAGTGTAGATCCATGCAGTGGATCACAGTTTGGTTGGGTGTCTCAAAACAATGATATACAAGGTTTCGTAAATAATGTCACCTGCAATTGCACATATCTTAATGCTACCGTCTGCCACGTCACCCATATAATTTTGAAGTCGCAGAGTTTGGCAGGGACGCTTCCATTGCAGCTCTTCAGATTGCCTTACCTTGAGGAACTTGATCTCTCTCGGAACTATCTTACCGGCGAAATTCCTCGACAATGGGCCTCCACCAAGCTTCTCAAACTTTTCTTGCTTGGAAATCGGTTGACGGGTTCGATTCCAGAAGAGATTGGAAACATCACTACTCTTAGAACGTTGGACTTAGAAGTCAATCATCTATCAGGAAGGTTACCTTCAACGCTTGGAAATTTGTTGAACTTGGAAATATTACTTCTTGCCTCGAATAACTTTTCTGGAAAGCTACCAACTTCTCTGGGAATGCTGACCTCATTAATCTCATTTCGAATAAGTGACAATAACTTTGAAGGACAAATACCAAGTTTCGTTCAGAATTGGATAAATGTTGAGAGAATAAGGATTCAAGCAAGTGGATTGAGTGGGCCTCTTCCTTCTGAAATCGGACTTTTGACCAAATTAACCGACCTAAGAATCACTGACTTGAATGGGCCTTCATCTCCCTTTCCACCTCTTAATAATTTGACCAATATCAGAAAACTAATATTAAGAAGTTGCAATATCACCGGATTGCTGCCCGACTACTTAGATGGGATGAAATCCTTGGAACTCTTAGACCTCAGCTTTAACAAAATAGGTGGGCAGATCCCTACAAGTTTCCATTCTCTTGCGAACGTAGATAACATATTTTTAACTGGAAACTTGCTCAATGGTTCGGTGCCTGAGTGGATGCTGCTTAGAGGAAATAGCATTGATCTCTCTTACAATAAATTTAAACCACAATCTACGGGCTGCCAATTACGAGATACGAACCTATTTGCGAGCTCCGCATTGGACAATAATTCTAATCTTGTTTCTTGTTTGGCGGACAACATCTGTTCCAAGAATCTATACCGTCTCCATATAAATTGTGGTGGCAAAAAAGAAGTGATTAATGGTACTAAGTTTGAAGGAGATAAAGACCCCGGCCTGTCATCTGTGTTTGTCTCGAGCAATACAAATTGGGGATTCAGCAACACTGGAATATATTTGGAGGATAGTCGTCTTTCAATTGACTATATTGAACTAAATTCATCAGAGCTTCGTATGGTAGATTCTAAACTATATGAGAATGCTCGCATTTCTCCATTGTCTCTTACATATTATGTGTACTGTATGGGGAATGGAAACTACACGATAAGCCTCCATTTTGCTGAAATTAGATTTACAAATGGTAAAACTTTTAGCAGCCTTGGAAGACGCATTTTTGATGTATATGTGCAGGGGCGGCTAGTGCTGAAGGATTTCAATATTGTAGATGCTGCAGGTGGTGCTGGTAAATCTGTGACAAAAAAGATTTCCACTTCTGTTACTGGTAATACCATAGAGATTCGTTTTTATTGGGCTGGGAAGGGAACATGTGCTATTCCCGTTGGTGGAGTCTACGGCCCTCTGATATCAGCCATTTCGATAGAGCCTGATTTTGAGCCTCCATCAAAAGGTCGAAGTCCCTTACCAATTGGTGCAATACTTGGAATGGTGGCTGCAGTCGCCCTTGTTATAGTTTCAATTCTTGGAATTCTATGGTGGAGAGGTTGCTTTGGACGGAAAAGTACATTTCATCAAGATCTCAAAGGTCTAGATCTGCAAACTGGTTCATTCACATTAAGGCAAATCAAAGCTGCCACTAATAACTTTGACATTTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTATAAGGGTTTTCTCTTGGATGGTAGCATAATTGCAGTGAAGCAACTTTCCTCCAAGTCAAAGCAAGGAACACACGAGTTTGTGAATGAGATAGGCATGATATCTGCTTTGCATCACCCACATCTGGTTAAACTTTATGGATGTTGTACCGAAGAAAATCAACTTCTGGTAGTATATGAATATATGGAAAATAATAGCCTCGCTCGGGCTTTGTTTGGACCTGAAGAAAGTCAATTGAAATTAGATTGGCCTACAAGACAGAAAATTTGTATTGGTATAGCCAAAGGCTTGGCTTATCTTCACGAGGAATCAAGATTGAAGATTGTTCACAGAGATATAAAAGCGACTAATGTATTGTTAGATAAAAATCTCAACCCCAAGATATCTGACTTTGGCCTTGCCAAGCTTGAAGAAGAAGGAAATACCCACATAAGCACTCGAATTGCTGGAACTTTTGGTTATATTGCGCCAGAGTATGCAATGCGAGGCTACTTGACTGATAAAGCAGATGTTTATAGCTTTGGCATTGTGGCCTTGGAAATAGTTAGTGGAAGGAGCAATACTACTTATCGATCAAAGGACGATTGCTTTTATCTGCTTGACTGGGCACTTGAATTAAAAGAAAAAGACAGTTTAATGGAGCTAGTTGATCCAAGGTTAGGCTCCAAGTTCAACCAGAGAGAAGCAATGACCATGATCAATATTGCTCTTCATTGCACCAATGTTTCTCCTACAGAAAGGCCTACCATGTCTTTAGTGGTGGCCATGCTGGAAGGCAAAGTTTCTGTGAAGGAGTTGAATTCACATCCAAATGACTCAAGAACAAAGATGAGTGCAATGTGGACCATTTTGGAGCAGAGCTTGAAACAAACTGACAATGAAAACCAGGCAGAGGTTATCTCTATGGAGATGCCATGTGCCAATTATTCTTCAACATCAATGAGTAGAAACTAG 2982 40.11 MLEIKNIIVVASLVVSSVIGLAFGSPLLPLEEVEGLKHVGETLEKRDWNFSVDPCSGSQFGWVSQNNDIQGFVNNVTCNCTYLNATVCHVTHIILKSQSLAGTLPLQLFRLPYLEELDLSRNYLTGEIPRQWASTKLLKLFLLGNRLTGSIPEEIGNITTLRTLDLEVNHLSGRLPSTLGNLLNLEILLLASNNFSGKLPTSLGMLTSLISFRISDNNFEGQIPSFVQNWINVERIRIQASGLSGPLPSEIGLLTKLTDLRITDLNGPSSPFPPLNNLTNIRKLILRSCNITGLLPDYLDGMKSLELLDLSFNKIGGQIPTSFHSLANVDNIFLTGNLLNGSVPEWMLLRGNSIDLSYNKFKPQSTGCQLRDTNLFASSALDNNSNLVSCLADNICSKNLYRLHINCGGKKEVINGTKFEGDKDPGLSSVFVSSNTNWGFSNTGIYLEDSRLSIDYIELNSSELRMVDSKLYENARISPLSLTYYVYCMGNGNYTISLHFAEIRFTNGKTFSSLGRRIFDVYVQGRLVLKDFNIVDAAGGAGKSVTKKISTSVTGNTIEIRFYWAGKGTCAIPVGGVYGPLISAISIEPDFEPPSKGRSPLPIGAILGMVAAVALVIVSILGILWWRGCFGRKSTFHQDLKGLDLQTGSFTLRQIKAATNNFDISNKIGEGGFGPVYKGFLLDGSIIAVKQLSSKSKQGTHEFVNEIGMISALHHPHLVKLYGCCTEENQLLVVYEYMENNSLARALFGPEESQLKLDWPTRQKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLEEEGNTHISTRIAGTFGYIAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTTYRSKDDCFYLLDWALELKEKDSLMELVDPRLGSKFNQREAMTMINIALHCTNVSPTERPTMSLVVAMLEGKVSVKELNSHPNDSRTKMSAMWTILEQSLKQTDNENQAEVISMEMPCANYSSTSMSRN 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107453834 107467123 - Tan0016766.1 Tan01g4270 741694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4270 993 SUPERFAMILY Protein kinase-like (PK-like) 646 958 IPR011009 -
Tan01g4270 993 Gene3D Transferase(Phosphotransferase) domain 1 738 952 - -
Tan01g4270 993 Gene3D Ribonuclease Inhibitor 46 194 IPR032675 -
Tan01g4270 993 FunFam Putative LRR receptor-like serine/threonine-protein kinase 738 945 - -
Tan01g4270 993 ProSiteProfiles Protein kinase domain profile. 662 948 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4270 993 Pfam Leucine rich repeat 280 339 IPR001611 GO:0005515(InterPro)
Tan01g4270 993 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 400 590 - -
Tan01g4270 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4270 993 CDD STKc_IRAK 668 935 - -
Tan01g4270 993 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 199 - -
Tan01g4270 993 Pfam Leucine Rich Repeat 114 132 IPR001611 GO:0005515(InterPro)
Tan01g4270 993 Pfam Leucine Rich Repeat 161 182 IPR001611 GO:0005515(InterPro)
Tan01g4270 993 Pfam Leucine Rich Repeat 184 205 IPR001611 GO:0005515(InterPro)
Tan01g4270 993 Gene3D Ribonuclease Inhibitor 195 263 IPR032675 -
Tan01g4270 993 Gene3D Ribonuclease Inhibitor 264 377 IPR032675 -
Tan01g4270 993 Gene3D Phosphorylase Kinase; domain 1 631 737 - -
Tan01g4270 993 Gene3D - 399 589 - -
Tan01g4270 993 Pfam Malectin domain 403 585 IPR021720 -
Tan01g4270 993 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 38 950 IPR051824 -
Tan01g4270 993 SMART serkin_6 662 933 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4270 993 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 737 - -
Tan01g4270 993 SUPERFAMILY L domain-like 80 406 - -
Tan01g4270 993 Pfam Protein tyrosine and serine/threonine kinase 664 932 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4268 Tan-Chr1:107419781 Tan01g4270 Tan-Chr1:107453834 9.60E-248 dispersed
Tan01g4270 Tan-Chr1:107453834 Tan01g4272 Tan-Chr1:107481813 0.00E+00 dispersed
Tan01g4269 Tan-Chr1:107419781 Tan01g4270 Tan-Chr1:107453834 2.30E-276 tandem
Tan01g4270 Tan-Chr1:107453834 Tan01g4271 Tan-Chr1:107481813 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67123 PF07714 PK_Tyr_Ser-Thr 1.60E-48 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4270 - - - 0.0