Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4271 ATGAAAATAAACAAGTTTTGGCTTTCCCTCTTGCAGCTCTCTACTCATTGTTGTTGCTCTTCAATTCCTTCGAGTTCCTCAAAACAAGTAAAATTGAAGATGTTGAATGCTATGAGTATAATAATAGTTGCTTCTTTAATTGTTCCTCTGGCTCTAAGTGGATTTCAACCTTCTAGATTGCCTCGTGAAGAAGAGGAAGGTTTAATGGGCGTGGCGATGGAATTGGGAAAGATGGAATGGAATTTCCTTGCAGATCCATGTAGCGGAGAACTTGGTTGGAAGAATGCTGATGACAATGGCATTTATGATTTTAGTAATACTGTCAAATGCAATTGCACTAGTTCTCGAGTTGGAGCTGTACGCCAAGGAATGGATGCTATATCCACCAATAACACAATCTGCCATGTCACCCATATAATTCTAAAGTCGCAGCGTTTGGCAGGGACGCTTCCATTGCAGCTCGTCAAATTGCCTTACCTTCAGGAACTCGATCTCTCTCGGAACTATCTTACCGGCGAAATTCCTCGACAATGGGCCACCACCAAGCTTGTCAAACTTGCCCTCTTCGGAAATCGGTTGACGGGTTCGATTCCAGAAGAGATTGGAAACATCGTTACTCTTAGAGAGTTGGATTTAGAAAGCAATAATCTATCCGGAAGTCTACCTTCAGCACTTGGAAATTTGTCAAACTTGGAAATATTACGCCTTTCCTCGAATAACTTTACTGGAAAGCTGCCGACGTCTCTGGGAATGCTGACCTCATTGCTCTCATTTCAAATCAGTGACAATAATTTTGAAGGACAAATACCAAGTTTCATTCAGAATTGGGGAAAAATTGAGAGAATAAAAAAAGAGAAGAAAGGTGATGCTGTTGACATACACGTGCAAATTTCCTCGTGCAGAAGAATCAGTGACTTGAACGGGGATCCATCACCCTTTCCACCTCTTAATAATTTGACCAATATCAGATATCTGATATTAAGAAGTTGCAATATCACTGGATTGCTGCCCAACTATTTAGATAGCATGAAATCTTTGGAAATCTTAGACCTAAGCTTTAACAGAATAAGGGGGCAAATTCCTGACAGTTTTAAGCTTGTTGTAGGAGAAGAAAAAACAAAAAACATATTTTTAACTGGAAACTTGTTAAATGGCGCGGTGCCTCCTTGGATGCTGCAAGAAGGAAAAACAAACATTGATCTCTCTTACAATAAATTTAAACCACAATCTAGTACAAACTACCAGTGTCAATCACGAAACACGAATCTGTTTGCAAGTTCAACGATGGACTATTATTCTCATCTTGTTTCTTGTTTGGCAAGCCACTCCTGTCCAAAGAATCTATATCGTCTCTTTATAAATTGTGGTGGGAAAGAAGAAACCATTAATGGTACTCAGTTTGAAGGAGATGATGAAACGGGCAAGCCGTCAGCGTTTTACTCAAGTACAACAAATTGGGCATTTAGCAACACTGGTATATTTTTTGACGATGAAAGCATTCAAGCTGACTTTCTTGAAACGAGTTCATCAAAGCTTCCAACGGATGACTCCGTATTGTATGAGACTGCTCGAGTTTCTCCATTATCTCTTACATATTATGTGTATTGTATGGGGAATGGAAACTACACAATAAGCTTACATTTTGCTGAAATTGCACTTACAAATGATACGGGCTTTGGTTGCCTTGGAAGACGCATTTTTGATATTTACGTGCAGGGAAGGCTAGTGCTGAAGGATTTTAATATTGTAGATGCTGCAGGGGGTGTCCGTAAACCTGTCACAAAAATGATTCCCGTTAATGTTACGAATAGTACCTTGGAGATTCGATTTTATTGGGCTGGAAAGGGTACATATAAAATCCCTAAGAAAGGAGTTTATGGTCCTCTGATATCAGCAATTTCGATTAATCCTGACTTCGAGCCTCCAAAAGGTCAAACACCTATAGGTGCAGTACTGGGAATTGTGGCTGCAATCATCCTTGTTATAATTTCGGTTCTTGGAATTATGTGGTGGAGAGGTTGCCTTGGACAGAAAAGTACACTTCATCAAGATCTGAAAGGTCTAGATCTACAAACTGGTTCATTCACGTTAAGGCAAATCAAAGCTGCTACAAATAACTTCGACACTTCCAACATGATTGGGGAAGGTGGTTTTGGTCCTGTTTATAAGGGGTTTCTCTTGGATGGCACCATAATTGCCGTGAAGCAACTTTCCTCTAAGTCAAAGCAAGGAATGCGGGAGTTCGTGACTGAGATAGGCATGATATCTGCTTTGCATCACCCTCATCTAGTTAAACTTTATGGATGTTGCATCGAAGAAAATCAACTTCTTCTAGTATACGAATATCTAGAAAATAATAGCCTTGCTCGGGCTATGTTTGGACCAGAAGAAAGTCAACTGAAATTAGATTGGCCAACAAGACGGAAAATTTGTATTGGTATAGCCAAAGGTTTGGCTTATCTTCATGACGAATCAAGATTGAAGATTGTCCACAGGGATATTAAAGCAACTAATATATTGTTAGATAAAAATCTCAACCCCAAGATATCTGACTTTGGTTTGGCCAAGCTAGATGAGGAAGGAACTACCCACATTAGCACTCGAATTGCTGGAACTTTTGGATATATTGCGCCAGAATATGCAACGCGAGGCCGCTTAACTGATAAAGCAGATGTTTATAGCTTTGGCATTGTGGCCTTAGAAATAGTTAGTGGAAGGAGCAACACTATTTATCGGTCAAAGGATGATTGCTTTTATCTGCTAGACTGGGCACTTGAATTAAAAGAGAAAGAGAGTTTAATGGAGCTAGTTGATCCAAGGTTAGGCTCCAACTTCAACCATAGAGAGGCGATGGCCATGATCAATATTGCTCTTCATTGCACCAATGTGTGTCCTACAGAAAGGCCTACCATGTCTTTAGTGGTGGCCATGCTGGAAGGCAAGGTTGCTGTGAAGGAGTTGGTTTCCAATCCAAATGACTCAAGAACAAAGATGAGTGCCATGTGGACCATTTTGGAGCAGAGCTTCAAACAAACTGACAATGAAAACCAGGCAGAGATTCTCACCATGGACATGCCATGTACCAGTTCTTCACTTTAA 3099 40.27 MKINKFWLSLLQLSTHCCCSSIPSSSSKQVKLKMLNAMSIIIVASLIVPLALSGFQPSRLPREEEEGLMGVAMELGKMEWNFLADPCSGELGWKNADDNGIYDFSNTVKCNCTSSRVGAVRQGMDAISTNNTICHVTHIILKSQRLAGTLPLQLVKLPYLQELDLSRNYLTGEIPRQWATTKLVKLALFGNRLTGSIPEEIGNIVTLRELDLESNNLSGSLPSALGNLSNLEILRLSSNNFTGKLPTSLGMLTSLLSFQISDNNFEGQIPSFIQNWGKIERIKKEKKGDAVDIHVQISSCRRISDLNGDPSPFPPLNNLTNIRYLILRSCNITGLLPNYLDSMKSLEILDLSFNRIRGQIPDSFKLVVGEEKTKNIFLTGNLLNGAVPPWMLQEGKTNIDLSYNKFKPQSSTNYQCQSRNTNLFASSTMDYYSHLVSCLASHSCPKNLYRLFINCGGKEETINGTQFEGDDETGKPSAFYSSTTNWAFSNTGIFFDDESIQADFLETSSSKLPTDDSVLYETARVSPLSLTYYVYCMGNGNYTISLHFAEIALTNDTGFGCLGRRIFDIYVQGRLVLKDFNIVDAAGGVRKPVTKMIPVNVTNSTLEIRFYWAGKGTYKIPKKGVYGPLISAISINPDFEPPKGQTPIGAVLGIVAAIILVIISVLGIMWWRGCLGQKSTLHQDLKGLDLQTGSFTLRQIKAATNNFDTSNMIGEGGFGPVYKGFLLDGTIIAVKQLSSKSKQGMREFVTEIGMISALHHPHLVKLYGCCIEENQLLLVYEYLENNSLARAMFGPEESQLKLDWPTRRKICIGIAKGLAYLHDESRLKIVHRDIKATNILLDKNLNPKISDFGLAKLDEEGTTHISTRIAGTFGYIAPEYATRGRLTDKADVYSFGIVALEIVSGRSNTIYRSKDDCFYLLDWALELKEKESLMELVDPRLGSNFNHREAMAMINIALHCTNVCPTERPTMSLVVAMLEGKVAVKELVSNPNDSRTKMSAMWTILEQSFKQTDNENQAEILTMDMPCTSSSL 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107481813 107513580 - Tan0002786.1 Tan01g4271 741695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4271 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4271 1032 SMART serkin_6 707 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4271 1032 Gene3D - 448 638 - -
Tan01g4271 1032 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 51 995 IPR051824 -
Tan01g4271 1032 Gene3D Phosphorylase Kinase; domain 1 675 782 - -
Tan01g4271 1032 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 676 782 - -
Tan01g4271 1032 Pfam Protein tyrosine and serine/threonine kinase 710 977 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4271 1032 SUPERFAMILY L domain-like 132 407 - -
Tan01g4271 1032 Gene3D Ribonuclease Inhibitor 287 433 IPR032675 -
Tan01g4271 1032 CDD STKc_IRAK 713 980 - -
Tan01g4271 1032 Gene3D Transferase(Phosphotransferase) domain 1 783 996 - -
Tan01g4271 1032 FunFam Putative LRR receptor-like serine/threonine-protein kinase 783 990 - -
Tan01g4271 1032 SMART LRR_typ_2 343 366 IPR003591 -
Tan01g4271 1032 SMART LRR_typ_2 157 181 IPR003591 -
Tan01g4271 1032 SMART LRR_typ_2 204 227 IPR003591 -
Tan01g4271 1032 SMART LRR_typ_2 319 342 IPR003591 -
Tan01g4271 1032 SMART LRR_typ_2 228 252 IPR003591 -
Tan01g4271 1032 ProSiteProfiles Leucine-rich repeat profile. 345 367 IPR001611 GO:0005515(InterPro)
Tan01g4271 1032 Pfam Malectin domain 451 633 IPR021720 -
Tan01g4271 1032 SUPERFAMILY Protein kinase-like (PK-like) 691 1004 IPR011009 -
Tan01g4271 1032 Gene3D Ribonuclease Inhibitor 124 285 IPR032675 -
Tan01g4271 1032 FunFam Piriformospora indica-insensitive protein 2 178 271 - -
Tan01g4271 1032 Pfam Leucine Rich Repeat 345 365 IPR001611 GO:0005515(InterPro)
Tan01g4271 1032 Pfam Leucine Rich Repeat 160 177 IPR001611 GO:0005515(InterPro)
Tan01g4271 1032 Pfam Leucine Rich Repeat 321 342 IPR001611 GO:0005515(InterPro)
Tan01g4271 1032 Pfam Leucine Rich Repeat 207 228 IPR001611 GO:0005515(InterPro)
Tan01g4271 1032 Pfam Leucine Rich Repeat 230 251 IPR001611 GO:0005515(InterPro)
Tan01g4271 1032 ProSiteProfiles Protein kinase domain profile. 707 988 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4271 1032 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 448 638 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4271 Tan-Chr1:107481813 Tan01g4277 Tan-Chr1:107599434 7.10E-301 dispersed
Tan01g4270 Tan-Chr1:107453834 Tan01g4271 Tan-Chr1:107481813 0.00E+00 tandem
Tan01g4271 Tan-Chr1:107481813 Tan01g4272 Tan-Chr1:107481813 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67124 PF00069 Pkinase 2.70E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4271 - - - 0.0