Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4272 ATGTTGTTTTTGCCTGAAATATTCGTTGTTGTTGTTGTTTGGAGATACAGAATTCTAAAGTCGCAGCGTTTGGCAGGGACGCTTCCATTGCAGCTCGTCAAATTGCCTTACCTTCAGGAACTCGATCTCTCTCGGAACTATCTTACCGGCGAAATTCCTCGACAATGGGCCACCACCAAGCTTGTCAAACTTGCCCTCTTCGGAAATCGGTTGACGGGTTCGATTCCAGAAGAGATTGGAAACATCGTTACTCTTAGAGAGTTGGATTTAGAAAGCAATAATCTATCCGGAAGTCTACCTTCAGCACTTGGAAATTTGTCAAACTTGGAAATATTACGCCTTTCCTCGAATAACTTTACTGGAAAGCTGCCGACGTCTCTGGGAATGCTGACCTCATTGCTCTCATTTCAAATCAGTGACAATAATTTTGAAGGACAAATACCAAGTTTCATTCAGAATTGGGGAAAAATTGAGAGAATAAGGATTCAGGGAAGTGGGTTGAGTGGGCCTCTTCCTTCTCAAATCAGTCTTCTTACCAATTTAACCGACATAAGAATCAGTGACTTGAACGGGGATCCATCACCCTTTCCACCTCTTAATAATTTGACCAATATCAGATATCTGATATTAAGAAGTTGCAATATCACTGGATTGCTGCCCAACTATTTAGATAGCATGAAATCTTTGGAAATCTTAGACCTAAGCTTTAACAGAATAAGGGGGCAAATTCCTGACAGTTTTAAGCTTGTTGTAGGAGAAGAAAAAACAAAAAACATATTTTTAACTGGAAACTTGTTAAATGGCGCGGTGCCTCCTTGGATGCTGCAAGAAGGAAAAACAAACATTGATCTCTCTTACAATAAATTTAAACCACAATCTAGTACAAACTACCAGTGTCAATCACGAAACACGAATCTGTTTGCAAGTTCAACGATGGACTATTATTCTCATCTTGTTTCTTGTTTGGCAAGCCACTCCTGTCCAAAGAATCTATATCGTCTCTTTATAAATTGTGGTGGGAAAGAAGAAACCATTAATGGTACTCAGTTTGAAGGAGATGATGAAACGGGCAAGCCGTCAGCGTTTTACTCAAGTACAACAAATTGGGCATTTAGCAACACTGGTATATTTTTTGACGATGAAAGCATTCAAGCTGACTTTCTTGAAACGAGTTCATCAAAGCTTCCAACGGATGACTCCGTATTGTATGAGACTGCTCGAGTTTCTCCATTATCTCTTACATATTATGTGTATTGTATGGGGAATGGAAACTACACAATAAGCTTACATTTTGCTGAAATTGCACTTACAAATGATACGGGCTTTGGTTGCCTTGGAAGACGCATTTTTGATATTTACGTGCAGGGAAGGCTAGTGCTGAAGGATTTTAATATTGTAGATGCTGCAGGGGGTGTCCGTAAACCTGTCACAAAAATGATTCCCGTTAATGTTACGAATAGTACCTTGGAGATTCGATTTTATTGGGCTGGAAAGGGTACATATAAAATCCCTAAGAAAGGAGTTTATGGTCCTCTGATATCAGCAATTTCGATTAATCCTGACTTCGAGCCTCCAAAAGGTCAAACACCTATAGGTGCAGTACTGGGAATTGTGGCTGCAATCATCCTTGTTATAATTTCGGTTCTTGGAATTATGTGGTGGAGAGGTTGCCTTGGACAGAAAAGTACACTTCATCAAGATCTGAAAGGTCTAGATCTACAAACTGGTTCATTCACGTTAAGGCAAATCAAAGCTGCTACAAATAACTTCGACACTTCCAACATGATTGGGGAAGGTGGTTTTGGTCCTGTTTATAAGGGGTTTCTCTTGGATGGCACCATAATTGCCGTGAAGCAACTTTCCTCTAAGTCAAAGCAAGGAATGCGGGAGTTCGTGACTGAGATAGGCATGATATCTGCTTTGCATCACCCTCATCTAGTTAAACTTTATGGATGTTGCATCGAAGAAAATCAACTTCTTCTAGTATACGAATATCTAGAAAATAATAGCCTTGCTCGGGCTATGTTTGGACCAGAAGAAAGTCAACTGAAATTAGATTGGCCAACAAGACGGAAAATTTGTATTGGTATAGCCAAAGGTTTGGCTTATCTTCATGACGAATCAAGATTGAAGATTGTCCACAGGGATATTAAAGCAACTAATATATTGTTAGATAAAAATCTCAACCCCAAGATATCTGACTTTGGTTTGGCCAAGCTAGATGAGGAAGGAACTACCCACATTAGCACTCGAATTGCTGGAACTTTTGGATATATTGCGCCAGAATATGCAACGCGAGGCCGCTTAACTGATAAAGCAGATGTTTATAGCTTTGGCATTGTGGCCTTAGAAATAGTTAGTGGAAGGAGCAACACTATTTATCGGTCAAAGGATGATTGCTTTTATCTGCTAGACTGGGCACTTGAATTAAAAGAGAAAGAGAGTTTAATGGAGCTAGTTGATCCAAGGTTAGGCTCCAACTTCAACCATAGAGAGGCGATGGCCATGATCAATATTGCTCTTCATTGCACCAATGTGTGTCCTACAGAAAGGCCTACCATGTCTTTAGTGGTGGCCATGCTGGAAGGCAAGGTTGCTGTGAAGGAGTTGGTTTCCAATCCAAATGACTCAAGAACAAAGATGAGTGCCATGTGGACCATTTTGGAGCAGAGCTTCAAACAAACTGACAATGAAAACCAGGCAGAGATTCTCACCATGGACATGCCATGTACCAGTTCTTCACTTTAA 2748 40.36 MLFLPEIFVVVVVWRYRILKSQRLAGTLPLQLVKLPYLQELDLSRNYLTGEIPRQWATTKLVKLALFGNRLTGSIPEEIGNIVTLRELDLESNNLSGSLPSALGNLSNLEILRLSSNNFTGKLPTSLGMLTSLLSFQISDNNFEGQIPSFIQNWGKIERIRIQGSGLSGPLPSQISLLTNLTDIRISDLNGDPSPFPPLNNLTNIRYLILRSCNITGLLPNYLDSMKSLEILDLSFNRIRGQIPDSFKLVVGEEKTKNIFLTGNLLNGAVPPWMLQEGKTNIDLSYNKFKPQSSTNYQCQSRNTNLFASSTMDYYSHLVSCLASHSCPKNLYRLFINCGGKEETINGTQFEGDDETGKPSAFYSSTTNWAFSNTGIFFDDESIQADFLETSSSKLPTDDSVLYETARVSPLSLTYYVYCMGNGNYTISLHFAEIALTNDTGFGCLGRRIFDIYVQGRLVLKDFNIVDAAGGVRKPVTKMIPVNVTNSTLEIRFYWAGKGTYKIPKKGVYGPLISAISINPDFEPPKGQTPIGAVLGIVAAIILVIISVLGIMWWRGCLGQKSTLHQDLKGLDLQTGSFTLRQIKAATNNFDTSNMIGEGGFGPVYKGFLLDGTIIAVKQLSSKSKQGMREFVTEIGMISALHHPHLVKLYGCCIEENQLLLVYEYLENNSLARAMFGPEESQLKLDWPTRRKICIGIAKGLAYLHDESRLKIVHRDIKATNILLDKNLNPKISDFGLAKLDEEGTTHISTRIAGTFGYIAPEYATRGRLTDKADVYSFGIVALEIVSGRSNTIYRSKDDCFYLLDWALELKEKESLMELVDPRLGSNFNHREAMAMINIALHCTNVCPTERPTMSLVVAMLEGKVAVKELVSNPNDSRTKMSAMWTILEQSFKQTDNENQAEILTMDMPCTSSSL 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107481813 107490312 - Tan0002786.2 Tan01g4272 741696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4272 915 Gene3D - 331 521 - -
Tan01g4272 915 ProSiteProfiles Protein kinase domain profile. 590 871 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4272 915 SMART LRR_typ_2 82 105 IPR003591 -
Tan01g4272 915 SMART LRR_typ_2 202 225 IPR003591 -
Tan01g4272 915 SMART LRR_typ_2 226 249 IPR003591 -
Tan01g4272 915 SMART LRR_typ_2 106 130 IPR003591 -
Tan01g4272 915 SMART LRR_typ_2 35 59 IPR003591 -
Tan01g4272 915 Gene3D Ribonuclease Inhibitor 190 311 IPR032675 -
Tan01g4272 915 Pfam Leucine Rich Repeat 38 55 IPR001611 GO:0005515(InterPro)
Tan01g4272 915 Pfam Leucine Rich Repeat 204 225 IPR001611 GO:0005515(InterPro)
Tan01g4272 915 Pfam Leucine Rich Repeat 60 81 IPR001611 GO:0005515(InterPro)
Tan01g4272 915 Pfam Leucine Rich Repeat 85 106 IPR001611 GO:0005515(InterPro)
Tan01g4272 915 Pfam Leucine Rich Repeat 228 248 IPR001611 GO:0005515(InterPro)
Tan01g4272 915 Pfam Leucine Rich Repeat 108 129 IPR001611 GO:0005515(InterPro)
Tan01g4272 915 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 30 127 - -
Tan01g4272 915 SMART serkin_6 590 861 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4272 915 SUPERFAMILY Protein kinase-like (PK-like) 574 887 IPR011009 -
Tan01g4272 915 Gene3D Transferase(Phosphotransferase) domain 1 666 880 - -
Tan01g4272 915 ProSiteProfiles Leucine-rich repeat profile. 228 250 IPR001611 GO:0005515(InterPro)
Tan01g4272 915 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 878 IPR051824 -
Tan01g4272 915 FunFam Putative LRR receptor-like serine/threonine-protein kinase 666 873 - -
Tan01g4272 915 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 331 521 - -
Tan01g4272 915 Pfam Protein tyrosine and serine/threonine kinase 593 860 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4272 915 Pfam Malectin domain 334 516 IPR021720 -
Tan01g4272 915 SUPERFAMILY L domain-like 18 245 - -
Tan01g4272 915 Gene3D Phosphorylase Kinase; domain 1 558 665 - -
Tan01g4272 915 CDD STKc_IRAK 596 863 - -
Tan01g4272 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4272 915 Gene3D Ribonuclease Inhibitor 14 122 IPR032675 -
Tan01g4272 915 Gene3D Ribonuclease Inhibitor 123 189 IPR032675 -
Tan01g4272 915 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 559 665 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4270 Tan-Chr1:107453834 Tan01g4272 Tan-Chr1:107481813 0.00E+00 dispersed
Tan01g4272 Tan-Chr1:107481813 Tan01g4284 Tan-Chr1:107670892 1.20E-267 dispersed
Tan01g4271 Tan-Chr1:107481813 Tan01g4272 Tan-Chr1:107481813 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67125 PF00069 Pkinase 2.20E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4272 - - - 0.0