Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4276 ATGTTTGTAGCTCGATTCCTCGCCGTCGTTTCTCTCTTATCTCTCGCATCCGGCGCCGCTCGGCTGCCGGACGACGAAGTTGAGGCATTGAGGGAGATCGGAAAGACATTGGGGAAGACGGACTGGAATTTCACGGCGAATCCATGCGGCGGTTTGAGCAGCGGTTGGATAACGGAATCTTCGGATTATACAGTGAGCATTAATTTCGCTAATAATGTCACCTGCAACTGCAAGTTCCATAAGAATACAGTCTGTCACGTCACTCACATTATTCTAAAGGCGCAGAGCCTTCCAGGTACTCTGCCACCGGAAATAGTGAGGTTGCCTTTCCTGCAGGAAATCAATCTCAACCGCAACTATCTCAGCGGCACAATTCCTCCGGAATGGGGTTCCACCAAGCTTCTCAACATTACTGTTTCTTCAAATCGGTTGACAGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTCTAGGGTTGATCTTGGAAATGAATCATTTTTATGGAAGTCTACCTCCAGAACTTGGAAATTTGCCCAGATTATCAATGTTAATTATTTCCTCAAACAACTTCTCTGGGGAGCTCCCACCTTCACTGGCTAGGATAACCTCAATGACGGACTTTCGAATTAGTGATAATCACTTCACAGGGTCAATACCTAAGTTTATTCGAAATTGGATGAATCTTGAAAAAATAGCTATTCGGGCAAGCGGGTTGACTGGACCCATTCCTTCTGAAATTGGACTATTGACAAACTTGGTTGATGTGAGAATCTGTGACTTGGAGGGAGATTCATCACCCTTTCCACCGCTTCATACTTTGACAAAATTGAAAGTTCTGTTATTGAGGAATTGCAATATAACTGGGATGCTGCCCGACAATCTTGATGGGTTGACAGAATTGCAAAACTTAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGAAAGCTTTGCAGCTTTGAAAAACGTGAAGGGCATATATTTAACTGGGAATTTGCTAAATGGATCAGTGCCTCCTTGGATGCTACAGAATGGAGAAAACATTGATCTCTCTTATAACAAATTTACTCCGAGTAATGATCAAAACATTGGTTGTGAATTACGAAATTTAAATCTTTTTGCGAGCTCTTCACAGGACAATAATTCTGGAACAGTTTCATGTTTAGAGGACGCTTGTAGAAAAACATGGTACTTTCTCCACATCAACTGCGGTGGGAAGGAAGAATTAATTAACGGAACAATCAAGTTTGATGGAGACACAAACACGGGCAAATCGTCATTATTTTTTCAAGGTGGAGAAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGACGATGATAGCTCAGCATACGACTTTATTGCATTAAATTCATCTGCTCTCTCAATGCCAAATTCTGAATTGTACGTGAGGGCACGCATTTCTCCACTCTCTCTTACTTATTATGCATATTGCATGGGTAATGGAAACTACACCGTAAGCCTCCATTTTGCTGAGATAGAGTTTACTAATGACAAAACATACAAAAGCCTCGGCAGACGCGTATTTGATGTCTATGTTCAGAGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTGTTGGCAAACCTTTTGTAAAGAAATTCACTGTTTCTGTGACCAATGGTACTATAGAGATCCGCCTATTTTGGGCTGGGAAGGGGACACATGCAATCCCTGAGAGAGGAGTTTACGGTCCTCTAATTTCAGCCATTTCTATTGAACCTGACTTTATGCCACCATCAGAAAGTGGAAATGGCATGTCTGCCGGTCCAGAGGTTGGAATTGTGACTGCTGTCCTCTTTGTTATTATATTGGTTCAAAGACTCTTGTGGTGGAGAGGCTGCCCAAGAAAGAAAAACACACTTGAAGAAGAGTTGAAGGGCCTAGATCTAGGAACAGGTTCATTTTCATTAAGACAAATCAGAGCGGCCACTAACAATTTTGATGCTGCCAATAAAATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTGTTCTTTCCGATGGCACTGTAATTGCAGTGAAACAACTTTCTTCAAAGTCAAAGCAGGGAAATCGTGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTCATGGATGCTGTATTGAAGGAGATCAACTTTTGCTAATATATGAGTATCTGGAAAATAATAGTCTTGCTCGTGCCTTGTTCGGACCTGAAGAATGTCAACTGGAATTGGATTGGCCAACTAGGCACAAGATTTGTGTTGGTATAGCTAGAGGTTTAGCATATCTTCATGAGGAGTCAAGACTTAAGATCGTTCATCGAGACATCAAAGCTACCAATGTTCTGCTCGATAAAAATCTCAACCCCAAGATTTCCGACTTCGGTTTGGCCAAGCTGGATGAAGAAGAAAATACACACATCAGCACACGGGTGGCTGGAACCTATGGGTATATGGCACCAGAATACGCAATGCGTGGCTACTTAACTGACAAGGCAGATGTTTATAGCTTTGGCATTGTGGCGTTGGAAATAGTCGGTGGTCGAAGCAACACAAGTTTTCGAACTAAGGATGATTGCTTTTACCTTCTTGACCATGCTAATACTTTAAAAGAAAAAGACAGTTTACTAGAGCTTGTGGATCCACGGTTAGGCTCTGAATTGAACAAGAGTGAGGCACTGACAGTGATCAATATTGCTCTCCTGTGCACAAACGTTGCTGCTGCGGACAGACCTGCCATGTCATCAGTGGTGAGCATGCTGGAAGGGAAGGATGCTGTGAAGGAGGTGGTTTCAGACCCTAGTGTTTCAAAACAAGATGTGAATGCAGTGTGGAGCCAAATTTATCGCCAGAAAGTGCAAACAACGAGTGAGAGCTCGACGCATAGTGTGTTGACGGATGGACCATGGACTGGTTCTTCGACTACTGACAGTGAAGTCTATCCCATCCTCAAGGCTTCTAAGTACTAG 3006 42.78 MFVARFLAVVSLLSLASGAARLPDDEVEALREIGKTLGKTDWNFTANPCGGLSSGWITESSDYTVSINFANNVTCNCKFHKNTVCHVTHIILKAQSLPGTLPPEIVRLPFLQEINLNRNYLSGTIPPEWGSTKLLNITVSSNRLTGPIPKEIGNISTLLGLILEMNHFYGSLPPELGNLPRLSMLIISSNNFSGELPPSLARITSMTDFRISDNHFTGSIPKFIRNWMNLEKIAIRASGLTGPIPSEIGLLTNLVDVRICDLEGDSSPFPPLHTLTKLKVLLLRNCNITGMLPDNLDGLTELQNLDFSFNKITGPIPESFAALKNVKGIYLTGNLLNGSVPPWMLQNGENIDLSYNKFTPSNDQNIGCELRNLNLFASSSQDNNSGTVSCLEDACRKTWYFLHINCGGKEELINGTIKFDGDTNTGKSSLFFQGGENWGFSNTGSFMDDDSSAYDFIALNSSALSMPNSELYVRARISPLSLTYYAYCMGNGNYTVSLHFAEIEFTNDKTYKSLGRRVFDVYVQRKLELKDFNIADAAGGVGKPFVKKFTVSVTNGTIEIRLFWAGKGTHAIPERGVYGPLISAISIEPDFMPPSESGNGMSAGPEVGIVTAVLFVIILVQRLLWWRGCPRKKNTLEEELKGLDLGTGSFSLRQIRAATNNFDAANKIGEGGFGPVYKGVLSDGTVIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLHGCCIEGDQLLLIYEYLENNSLARALFGPEECQLELDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGIVALEIVGGRSNTSFRTKDDCFYLLDHANTLKEKDSLLELVDPRLGSELNKSEALTVINIALLCTNVAAADRPAMSSVVSMLEGKDAVKEVVSDPSVSKQDVNAVWSQIYRQKVQTTSESSTHSVLTDGPWTGSSTTDSEVYPILKASKY 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107599434 107609593 - Tan0007910.1 Tan01g4276 741700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4276 1001 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 590 - -
Tan01g4276 1001 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 737 - -
Tan01g4276 1001 Pfam Leucine Rich Repeat 182 201 IPR001611 GO:0005515(InterPro)
Tan01g4276 1001 Pfam Leucine Rich Repeat 111 130 IPR001611 GO:0005515(InterPro)
Tan01g4276 1001 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 949 IPR051824 -
Tan01g4276 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4276 1001 Gene3D Phosphorylase Kinase; domain 1 629 737 - -
Tan01g4276 1001 Pfam Malectin domain 401 585 IPR021720 -
Tan01g4276 1001 ProSiteProfiles Protein kinase domain profile. 662 948 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4276 1001 CDD STKc_IRAK 668 935 - -
Tan01g4276 1001 Gene3D Ribonuclease Inhibitor 24 189 IPR032675 -
Tan01g4276 1001 Pfam Protein tyrosine and serine/threonine kinase 665 932 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4276 1001 SUPERFAMILY L domain-like 82 359 - -
Tan01g4276 1001 Gene3D - 398 589 - -
Tan01g4276 1001 SUPERFAMILY Protein kinase-like (PK-like) 646 959 IPR011009 -
Tan01g4276 1001 SMART serkin_6 662 933 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4276 1001 Gene3D Ribonuclease Inhibitor 190 259 IPR032675 -
Tan01g4276 1001 Gene3D Ribonuclease Inhibitor 260 369 IPR032675 -
Tan01g4276 1001 Pfam Leucine rich repeat 277 336 IPR001611 GO:0005515(InterPro)
Tan01g4276 1001 Gene3D Transferase(Phosphotransferase) domain 1 738 955 - -
Tan01g4276 1001 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 28 196 - -
Tan01g4276 1001 FunFam Putative LRR receptor-like serine/threonine-protein kinase 738 945 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4276 Tan-Chr1:107599434 Tan01g4280 Tan-Chr1:107599434 0.00E+00 dispersed
Tan01g4275 Tan-Chr1:107571234 Tan01g4276 Tan-Chr1:107599434 0.00E+00 tandem
Tan01g4276 Tan-Chr1:107599434 Tan01g4277 Tan-Chr1:107599434 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67128 PF07714 PK_Tyr_Ser-Thr 2.30E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4276 - - - 0.0