Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4277 ATGTTTGTAGCTCGATTCCTCGCCGTCGTTTCTCTCTTATCTCTCGCATCCGGCGCCGCTCGGCTGCCGGACGACGAAGTTGAGGCATTGAGGGAGATCGGAAAGACATTGGGGAAGACGGACTGGAATTTCACGGCGAATCCATGCGGCGGTTTGAGCAGCGGTTGGATAACGGAATCTTCGGATTATACAGTGAGCATTAATTTCGCTAATAATGTCACCTGCAACTGCAAGTTCCATAAGAATACAGTCTGTCACGTCACTCACATTATTCTAAAGGCGCAGAGCCTTCCAGGTACTCTGCCACCGGAAATAGTGAGGTTGCCTTTCCTGCAGGAAATCAATCTCAACCGCAACTATCTCAGCGGCACAATTCCTCCGGAATGGGGTTCCACCAAGCTTCTCAACATTACTGTTTCTTCAAATCGGTTGACAGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTCTAGGGTTGATCTTGGAAATGAATCATTTTTATGGAAGTCTACCTCCAGAACTTGGAAATTTGCCCAGATTATCAATGTTAATTATTTCCTCAAACAACTTCTCTGGGGAGCTCCCACCTTCACTGGCTAGGATAACCTCAATGACGGACTTAGCTATTCGGGCAAGCGGGTTGACTGGACCCATTCCTTCTGAAATTGGACTATTGACAAACTTGGTTGATGTGAGAATCTGTGACTTGGAGGGAGATTCATCACCCTTTCCACCGCTTCATACTTTGACAAAATTGAAAGTTCTGTTATTGAGGAATTGCAATATAACTGGGATGCTGCCCGACAATCTTGATGGGTTGACAGAATTGCAAAACTTAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGAAAGCTTTGCAGCTTTGAAAAACGTGAAGGGCATATATTTAACTGGGAATTTGCTAAATGGATCAGTGCCTCCTTGGATGCTACAGAATGGAGAAAACATTGATCTCTCTTATAACAAATTTACTCCGAGTAATGATCAAAACATTGGTTGTGAATTACGAAATTTAAATCTTTTTGCGAGCTCTTCACAGGACAATAATTCTGGAACAGTTTCATGTTTAGAGGACGCTTGTAGAAAAACATGGTACTTTCTCCACATCAACTGCGGTGGGAAGGAAGAATTAATTAACGGAACAATCAAGTTTGATGGAGACACAAACACGGGCAAATCGTCATTATTTTTTCAAGGTGGAGAAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGACGATGATAGCTCAGCATACGACTTTATTGCATTAAATTCATCTGCTCTCTCAATGCCAAATTCTGAATTGTACGTGAGGGCACGCATTTCTCCACTCTCTCTTACTTATTATGCATATTGCATGGGTAATGGAAACTACACCGTAAGCCTCCATTTTGCTGAGATAGAGTTTACTAATGACAAAACATACAAAAGCCTCGGCAGACGCGTATTTGATGTCTATGTTCAGAGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTGTTGGCAAACCTTTTGTAAAGAAATTCACTGTTTCTGTGACCAATGGTACTATAGAGATCCGCCTATTTTGGGCTGGGAAGGGGACACATGCAATCCCTGAGAGAGGAGTTTACGGTCCTCTAATTTCAGCCATTTCTATTGAACCTGACTTTATGCCACCATCAGAAAGTGGAAATGGCATGTCTGCCGGTCCAGAGGTTGGAATTGTGACTGCTGTCCTCTTTGTTATTATATTGGTTCAAAGACTCTTGTGGTGGAGAGGCTGCCCAAGAAAGAAAAACACACTTGAAGAAGAGTTGAAGGGCCTAGATCTAGGAACAGGTTCATTTTCATTAAGACAAATCAGAGCGGCCACTAACAATTTTGATGCTGCCAATAAAATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTGTTCTTTCCGATGGCACTGTAATTGCAGTGAAACAACTTTCTTCAAAGTCAAAGCAGGGAAATCGTGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTCATGGATGCTGTATTGAAGGAGATCAACTTTTGCTAATATATGAGTATCTGGAAAATAATAGTCTTGCTCGTGCCTTGTTCGGACCTGAAGAATGTCAACTGGAATTGGATTGGCCAACTAGGCACAAGATTTGTGTTGGTATAGCTAGAGGTTTAGCATATCTTCATGAGGAGTCAAGACTTAAGATCGTTCATCGAGACATCAAAGCTACCAATGTTCTGCTCGATAAAAATCTCAACCCCAAGATTTCCGACTTCGGTTTGGCCAAGCTGGATGAAGAAGAAAATACACACATCAGCACACGGGTGGCTGGAACCTATGGGTATATGGCACCAGAATACGCAATGCGTGGCTACTTAACTGACAAGGCAGATGTTTATAGCTTTGGCATTGTGGCGTTGGAAATAGTCGGTGGTCGAAGCAACACAAGTTTTCGAACTAAGGATGATTGCTTTTACCTTCTTGACCATGCTAATACTTTAAAAGAAAAAGACAGTTTACTAGAGCTTGTGGATCCACGGTTAGGCTCTGAATTGAACAAGAGTGAGGCACTGACAGTGATCAATATTGCTCTCCTGTGCACAAACGTTGCTGCTGCGGACAGACCTGCCATGTCATCAGTGGTGAGCATGCTGGAAGGGAAGGATGCTGTGAAGGAGGTGGTTTCAGACCCTAGTGTTTCAAAACAAGATGTGAATGCAGTGTGGAGCCAAATTTATCGCCAGAAAGTGCAAACAACGAGTGAGAGCTCGACGCATAGTGTGTTGACGGATGGACCATGGACTGGTTCTTCGACTACTGACAGTGAAGTCTATCCCATCCTCAAGGCTTCTAAGTACTAG 2934 43.08 MFVARFLAVVSLLSLASGAARLPDDEVEALREIGKTLGKTDWNFTANPCGGLSSGWITESSDYTVSINFANNVTCNCKFHKNTVCHVTHIILKAQSLPGTLPPEIVRLPFLQEINLNRNYLSGTIPPEWGSTKLLNITVSSNRLTGPIPKEIGNISTLLGLILEMNHFYGSLPPELGNLPRLSMLIISSNNFSGELPPSLARITSMTDLAIRASGLTGPIPSEIGLLTNLVDVRICDLEGDSSPFPPLHTLTKLKVLLLRNCNITGMLPDNLDGLTELQNLDFSFNKITGPIPESFAALKNVKGIYLTGNLLNGSVPPWMLQNGENIDLSYNKFTPSNDQNIGCELRNLNLFASSSQDNNSGTVSCLEDACRKTWYFLHINCGGKEELINGTIKFDGDTNTGKSSLFFQGGENWGFSNTGSFMDDDSSAYDFIALNSSALSMPNSELYVRARISPLSLTYYAYCMGNGNYTVSLHFAEIEFTNDKTYKSLGRRVFDVYVQRKLELKDFNIADAAGGVGKPFVKKFTVSVTNGTIEIRLFWAGKGTHAIPERGVYGPLISAISIEPDFMPPSESGNGMSAGPEVGIVTAVLFVIILVQRLLWWRGCPRKKNTLEEELKGLDLGTGSFSLRQIRAATNNFDAANKIGEGGFGPVYKGVLSDGTVIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLHGCCIEGDQLLLIYEYLENNSLARALFGPEECQLELDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGIVALEIVGGRSNTSFRTKDDCFYLLDHANTLKEKDSLLELVDPRLGSELNKSEALTVINIALLCTNVAAADRPAMSSVVSMLEGKDAVKEVVSDPSVSKQDVNAVWSQIYRQKVQTTSESSTHSVLTDGPWTGSSTTDSEVYPILKASKY 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107599434 107609593 - Tan0007910.2 Tan01g4277 741701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4277 977 Gene3D - 374 565 - -
Tan01g4277 977 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 607 713 - -
Tan01g4277 977 SUPERFAMILY Protein kinase-like (PK-like) 622 935 IPR011009 -
Tan01g4277 977 Gene3D Ribonuclease Inhibitor 39 158 IPR032675 -
Tan01g4277 977 Gene3D Ribonuclease Inhibitor 159 232 IPR032675 -
Tan01g4277 977 Pfam Protein tyrosine and serine/threonine kinase 641 908 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4277 977 SMART serkin_6 638 909 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4277 977 Pfam Leucine Rich Repeat 111 130 IPR001611 GO:0005515(InterPro)
Tan01g4277 977 Pfam Leucine Rich Repeat 182 201 IPR001611 GO:0005515(InterPro)
Tan01g4277 977 Pfam Malectin domain 377 561 IPR021720 -
Tan01g4277 977 Gene3D Transferase(Phosphotransferase) domain 1 714 931 - -
Tan01g4277 977 ProSiteProfiles Protein kinase domain profile. 638 924 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4277 977 FunFam Putative LRR receptor-like serine/threonine-protein kinase 714 921 - -
Tan01g4277 977 Pfam Leucine rich repeat 253 312 IPR001611 GO:0005515(InterPro)
Tan01g4277 977 Gene3D Ribonuclease Inhibitor 233 345 IPR032675 -
Tan01g4277 977 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 925 IPR051824 -
Tan01g4277 977 SUPERFAMILY L domain-like 70 335 - -
Tan01g4277 977 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 28 196 - -
Tan01g4277 977 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 375 566 - -
Tan01g4277 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4277 977 Gene3D Phosphorylase Kinase; domain 1 605 713 - -
Tan01g4277 977 CDD STKc_IRAK 644 911 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4271 Tan-Chr1:107481813 Tan01g4277 Tan-Chr1:107599434 7.10E-301 dispersed
Tan01g4274 Tan-Chr1:107550471 Tan01g4277 Tan-Chr1:107599434 0.00E+00 dispersed
Tan01g4277 Tan-Chr1:107599434 Tan01g4281 Tan-Chr1:107599434 0.00E+00 dispersed
Tan01g4276 Tan-Chr1:107599434 Tan01g4277 Tan-Chr1:107599434 0.00E+00 tandem
Tan01g4277 Tan-Chr1:107599434 Tan01g4278 Tan-Chr1:107599434 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67129 PF07714 PK_Tyr_Ser-Thr 2.20E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4277 - - - 0.0