Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4278 ATGTTTGTAGCTCGATTCCTCGCCGTCGTTTCTCTCTTATCTCTCGCATCCGGCGCCGCTCGGCTGCCGGACGACGAAGTTGAGGCATTGAGGGAGATCGGAAAGACATTGGGGAAGACGGACTGGAATTTCACGGCGAATCCATGCGGCGGTTTGAGCAGCGGTTGGATAACGGAATCTTCGGATTATACAGTGAGCATTAATTTCGCTAATAATGTCACCTGCAACTGCAAGTTCCATAAGAATACAGTCTGTCACGTCACTCACATTATTCTAAAGGCGCAGAGCCTTCCAGGTACTCTGCCACCGGAAATAGTGAGGTTGCCTTTCCTGCAGGAAATCAATCTCAACCGCAACTATCTCAGCGGCACAATTCCTCCGGAATGGGGTTCCACCAAGCTTCTCAACATTACTGTTTCTTCAAATCGGTTGACAGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTCTAGGGTTGATCTTGGAAATGAATCATTTTTATGGAAGTCTACCTCCAGAACTTGGAAATTTGCCCAGATTATCAATGTTAATTATTTCCTCAAACAACTTCTCTGGGGAGCTCCCACCTTCACTGGCTAGGATAACCTCAATGACGGACTTTCGAATTAGTGATAATCACTTCACAGGGTCAATACCTAAGTTTATTCGAAATTGGATGAATCTTGAAAAAATAGCTATTCGGGCAAGCGGGTTGACTGGACCCATTCCTTCTGAAATTGGACTATTGACAAACTTGGTTGATGTGAGAATCTGTGACTTGGAGGGAGATTCATCACCCTTTCCACCGCTTCATACTTTGACAAAATTGAAAGTTCTGTTATTGAGGAATTGCAATATAACTGGGATGCTGCCCGACAATCTTGATGGGTTGACAGAATTGCAAAACTTAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGAAAGCTTTGCAGCTTTGAAAAACGTGAAGGGCATATATTTAACTGGGAATTTGCTAAATGGATCAGTGCCTCCTTGGATGCTACAGAATGGAGAAAACATTGATCTCTCTTATAACAAATTTACTCCGAGTAATGATCAAAACATTGGTTGTGAATTACGAAATTTAAATCTTTTTGCGAGCTCTTCACAGGACAATAATTCTGGAACAGTTTCATGTTTAGAGGACGCTTGTAGAAAAACATGGTACTTTCTCCACATCAACTGCGGTGGGAAGGAAGAATTAATTAACGGAACAATCAAGTTTGATGGAGACACAAACACGGGCAAATCGTCATTATTTTTTCAAGGTGGAGAAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGACGATGATAGCTCAGCATACGACTTTATTGCATTAAATTCATCTGCTCTCTCAATGCCAAATTCTGAATTGTACGTGAGGGCACGCATTTCTCCACTCTCTCTTACTTATTATGCATATTGCATGGGTAATGGAAACTACACCGTAAGCCTCCATTTTGCTGAGATAGAGTTTACTAATGACAAAACATACAAAAGCCTCGGCAGACGCGTATTTGATGTCTATGTTCAGAGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTGTTGGCAAACCTTTTGTAAAGAAATTCACTGTTTCTGTGACCAATGGTACTATAGAGATCCGCCTATTTTGGGCTGGGAAGGGGACACATGCAATCCCTGAGAGAGGAGTTTACGGTCCTCTAATTTCAGCCATTTCTATTGAACCTGACTTTATGCCACCATCAGAAAGTGGAAATGGCATGTCTGCCGGTCCAGAGGTTGGAATTGTGACTGCTGTCCTCTTTGTTATTATATTGGTTCAAAGACTCTTGTGGTGGAGAGGCTGCCCAAGAAAGAAAAACACACTTGAAGAAGAGTTGAAGGGCCTAGATCTAGGAACAGGTTCATTTTCATTAAGACAAATCAGAGCGGCCACTAACAATTTTGATGCTGCCAATAAAATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTGTTCTTTCCGATGGCACTGTAATTGCAGTGAAACAACTTTCTTCAAAGTCAAAGCAGGGAAATCGTGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTCATGGATGCTGTATTGAAGGAGATCAACTTTTGCTAATATATGAGTATCTGGAAAATAATAGTCTTGCTCGTGCCTTGTTCGGTAAAAATATTTCCTTGCTACTTTTTACTGCTATTAATCTTCAGAAAATATTTTAA 2301 41.46 MFVARFLAVVSLLSLASGAARLPDDEVEALREIGKTLGKTDWNFTANPCGGLSSGWITESSDYTVSINFANNVTCNCKFHKNTVCHVTHIILKAQSLPGTLPPEIVRLPFLQEINLNRNYLSGTIPPEWGSTKLLNITVSSNRLTGPIPKEIGNISTLLGLILEMNHFYGSLPPELGNLPRLSMLIISSNNFSGELPPSLARITSMTDFRISDNHFTGSIPKFIRNWMNLEKIAIRASGLTGPIPSEIGLLTNLVDVRICDLEGDSSPFPPLHTLTKLKVLLLRNCNITGMLPDNLDGLTELQNLDFSFNKITGPIPESFAALKNVKGIYLTGNLLNGSVPPWMLQNGENIDLSYNKFTPSNDQNIGCELRNLNLFASSSQDNNSGTVSCLEDACRKTWYFLHINCGGKEELINGTIKFDGDTNTGKSSLFFQGGENWGFSNTGSFMDDDSSAYDFIALNSSALSMPNSELYVRARISPLSLTYYAYCMGNGNYTVSLHFAEIEFTNDKTYKSLGRRVFDVYVQRKLELKDFNIADAAGGVGKPFVKKFTVSVTNGTIEIRLFWAGKGTHAIPERGVYGPLISAISIEPDFMPPSESGNGMSAGPEVGIVTAVLFVIILVQRLLWWRGCPRKKNTLEEELKGLDLGTGSFSLRQIRAATNNFDAANKIGEGGFGPVYKGVLSDGTVIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLHGCCIEGDQLLLIYEYLENNSLARALFGKNISLLLFTAINLQKIF 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107599434 107609593 - Tan0007910.3 Tan01g4278 741702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4278 766 SUPERFAMILY L domain-like 82 359 - -
Tan01g4278 766 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 751 IPR051824 -
Tan01g4278 766 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 28 196 - -
Tan01g4278 766 Pfam Leucine Rich Repeat 111 130 IPR001611 GO:0005515(InterPro)
Tan01g4278 766 Pfam Leucine Rich Repeat 182 201 IPR001611 GO:0005515(InterPro)
Tan01g4278 766 Gene3D - 398 589 - -
Tan01g4278 766 Pfam Leucine rich repeat 277 336 IPR001611 GO:0005515(InterPro)
Tan01g4278 766 Gene3D Ribonuclease Inhibitor 260 371 IPR032675 -
Tan01g4278 766 Gene3D Ribonuclease Inhibitor 197 259 IPR032675 -
Tan01g4278 766 Gene3D Ribonuclease Inhibitor 26 196 IPR032675 -
Tan01g4278 766 Pfam Malectin domain 401 585 IPR021720 -
Tan01g4278 766 SUPERFAMILY Protein kinase-like (PK-like) 646 752 IPR011009 -
Tan01g4278 766 Gene3D Phosphorylase Kinase; domain 1 629 737 - -
Tan01g4278 766 ProSiteProfiles Protein kinase domain profile. 662 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4278 766 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 590 - -
Tan01g4278 766 Pfam Protein tyrosine and serine/threonine kinase 665 749 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4278 766 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 737 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4278 Tan-Chr1:107599434 Tan01g4284 Tan-Chr1:107670892 2.80E-254 dispersed
Tan01g4277 Tan-Chr1:107599434 Tan01g4278 Tan-Chr1:107599434 0.00E+00 tandem
Tan01g4278 Tan-Chr1:107599434 Tan01g4279 Tan-Chr1:107599434 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67130 PF11721 Malectin 1.10E-40 CL0202 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4278 - - - 0.0