Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4279 ATGTTTGTAGCTCGATTCCTCGCCGTCGTTTCTCTCTTATCTCTCGCATCCGGCGCCGCTCGGCTGCCGGACGACGAAGTTGAGGCATTGAGGGAGATCGGAAAGACATTGGGGAAGACGGACTGGAATTTCACGGCGAATCCATGCGGCGGTTTGAGCAGCGGTTGGATAACGGAATCTTCGGATTATACAGTGAGCATTAATTTCGCTAATAATGTCACCTGCAACTGCAAGTTCCATAAGAATACAGTCTGTCACGTCACTCACATTATTCTAAAGGCGCAGAGCCTTCCAGGTACTCTGCCACCGGAAATAGTGAGGTTGCCTTTCCTGCAGGAAATCAATCTCAACCGCAACTATCTCAGCGGCACAATTCCTCCGGAATGGGGTTCCACCAAGCTTCTCAACATTACTGTTTCTTCAAATCGGTTGACAGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTCTAGGGTTGATCTTGGAAATGAATCATTTTTATGGAAGTCTACCTCCAGAACTTGGAAATTTGCCCAGATTATCAATGTTAATTATTTCCTCAAACAACTTCTCTGGGGAGCTCCCACCTTCACTGGCTAGGATAACCTCAATGACGGACTTAGCTATTCGGGCAAGCGGGTTGACTGGACCCATTCCTTCTGAAATTGGACTATTGACAAACTTGGTTGATGTGAGAATCTGTGACTTGGAGGGAGATTCATCACCCTTTCCACCGCTTCATACTTTGACAAAATTGAAAGTTCTGTTATTGAGGAATTGCAATATAACTGGGATGCTGCCCGACAATCTTGATGGGTTGACAGAATTGCAAAACTTAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGAAAGCTTTGCAGCTTTGAAAAACGTGAAGGGCATATATTTAACTGGGAATTTGCTAAATGGATCAGTGCCTCCTTGGATGCTACAGAATGGAGAAAACATTGATCTCTCTTATAACAAATTTACTCCGAGTAATGATCAAAACATTGGTTGTGAATTACGAAATTTAAATCTTTTTGCGAGCTCTTCACAGGACAATAATTCTGGAACAGTTTCATGTTTAGAGGACGCTTGTAGAAAAACATGGTACTTTCTCCACATCAACTGCGGTGGGAAGGAAGAATTAATTAACGGAACAATCAAGTTTGATGGAGACACAAACACGGGCAAATCGTCATTATTTTTTCAAGGTGGAGAAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGACGATGATAGCTCAGCATACGACTTTATTGCATTAAATTCATCTGCTCTCTCAATGCCAAATTCTGAATTGTACGTGAGGGCACGCATTTCTCCACTCTCTCTTACTTATTATGCATATTGCATGGGTAATGGAAACTACACCGTAAGCCTCCATTTTGCTGAGATAGAGTTTACTAATGACAAAACATACAAAAGCCTCGGCAGACGCGTATTTGATGTCTATGTTCAGAGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTGTTGGCAAACCTTTTGTAAAGAAATTCACTGTTTCTGTGACCAATGGTACTATAGAGATCCGCCTATTTTGGGCTGGGAAGGGGACACATGCAATCCCTGAGAGAGGAGTTTACGGTCCTCTAATTTCAGCCATTTCTATTGAACCTGACTTTATGCCACCATCAGAAAGTGGAAATGGCATGTCTGCCGGTCCAGAGGTTGGAATTGTGACTGCTGTCCTCTTTGTTATTATATTGGTTCAAAGACTCTTGTGGTGGAGAGGCTGCCCAAGAAAGAAAAACACACTTGAAGAAGAGTTGAAGGGCCTAGATCTAGGAACAGGTTCATTTTCATTAAGACAAATCAGAGCGGCCACTAACAATTTTGATGCTGCCAATAAAATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTGTTCTTTCCGATGGCACTGTAATTGCAGTGAAACAACTTTCTTCAAAGTCAAAGCAGGGAAATCGTGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTCATGGATGCTGTATTGAAGGAGATCAACTTTTGCTAATATATGAGTATCTGGAAAATAATAGTCTTGCTCGTGCCTTGTTCGGTAAAAATATTTCCTTGCTACTTTTTACTGCTATTAATCTTCAGAAAATATTTTAA 2229 41.81 MFVARFLAVVSLLSLASGAARLPDDEVEALREIGKTLGKTDWNFTANPCGGLSSGWITESSDYTVSINFANNVTCNCKFHKNTVCHVTHIILKAQSLPGTLPPEIVRLPFLQEINLNRNYLSGTIPPEWGSTKLLNITVSSNRLTGPIPKEIGNISTLLGLILEMNHFYGSLPPELGNLPRLSMLIISSNNFSGELPPSLARITSMTDLAIRASGLTGPIPSEIGLLTNLVDVRICDLEGDSSPFPPLHTLTKLKVLLLRNCNITGMLPDNLDGLTELQNLDFSFNKITGPIPESFAALKNVKGIYLTGNLLNGSVPPWMLQNGENIDLSYNKFTPSNDQNIGCELRNLNLFASSSQDNNSGTVSCLEDACRKTWYFLHINCGGKEELINGTIKFDGDTNTGKSSLFFQGGENWGFSNTGSFMDDDSSAYDFIALNSSALSMPNSELYVRARISPLSLTYYAYCMGNGNYTVSLHFAEIEFTNDKTYKSLGRRVFDVYVQRKLELKDFNIADAAGGVGKPFVKKFTVSVTNGTIEIRLFWAGKGTHAIPERGVYGPLISAISIEPDFMPPSESGNGMSAGPEVGIVTAVLFVIILVQRLLWWRGCPRKKNTLEEELKGLDLGTGSFSLRQIRAATNNFDAANKIGEGGFGPVYKGVLSDGTVIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLHGCCIEGDQLLLIYEYLENNSLARALFGKNISLLLFTAINLQKIF 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107599434 107609593 - Tan0007910.4 Tan01g4279 741703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4279 742 Pfam Protein tyrosine and serine/threonine kinase 641 725 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4279 742 SUPERFAMILY L domain-like 70 334 - -
Tan01g4279 742 Gene3D Phosphorylase Kinase; domain 1 605 713 - -
Tan01g4279 742 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 375 566 - -
Tan01g4279 742 Pfam Leucine rich repeat 253 312 IPR001611 GO:0005515(InterPro)
Tan01g4279 742 Gene3D - 374 565 - -
Tan01g4279 742 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 607 713 - -
Tan01g4279 742 Pfam Malectin domain 377 561 IPR021720 -
Tan01g4279 742 Gene3D Ribonuclease Inhibitor 158 234 IPR032675 -
Tan01g4279 742 Gene3D Ribonuclease Inhibitor 235 348 IPR032675 -
Tan01g4279 742 ProSiteProfiles Protein kinase domain profile. 638 742 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4279 742 SUPERFAMILY Protein kinase-like (PK-like) 622 728 IPR011009 -
Tan01g4279 742 Gene3D Ribonuclease Inhibitor 39 157 IPR032675 -
Tan01g4279 742 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 727 IPR051824 -
Tan01g4279 742 Pfam Leucine Rich Repeat 182 201 IPR001611 GO:0005515(InterPro)
Tan01g4279 742 Pfam Leucine Rich Repeat 111 130 IPR001611 GO:0005515(InterPro)
Tan01g4279 742 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 28 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4279 Tan-Chr1:107599434 Tan01g4281 Tan-Chr1:107599434 4.50E-273 dispersed
Tan01g4278 Tan-Chr1:107599434 Tan01g4279 Tan-Chr1:107599434 0.00E+00 tandem
Tan01g4279 Tan-Chr1:107599434 Tan01g4280 Tan-Chr1:107599434 2.90E-248 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67131 PF11721 Malectin 1.00E-40 CL0202 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4279 - - - 0.0