Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4280 ATGAATCATTTTTATGGAAGTCTACCTCCAGAACTTGGAAATTTGCCCAGATTATCAATGTTAATTATTTCCTCAAACAACTTCTCTGGGGAGCTCCCACCTTCACTGGCTAGGATAACCTCAATGACGGACTTTCGAATTAGTGATAATCACTTCACAGGGTCAATACCTAAGTTTATTCGAAATTGGATGAATCTTGAAAAAATAGCTATTCGGGCAAGCGGGTTGACTGGACCCATTCCTTCTGAAATTGGACTATTGACAAACTTGGTTGATGTGAGAATCTGTGACTTGGAGGGAGATTCATCACCCTTTCCACCGCTTCATACTTTGACAAAATTGAAAGTTCTGTTATTGAGGAATTGCAATATAACTGGGATGCTGCCCGACAATCTTGATGGGTTGACAGAATTGCAAAACTTAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGAAAGCTTTGCAGCTTTGAAAAACGTGAAGGGCATATATTTAACTGGGAATTTGCTAAATGGATCAGTGCCTCCTTGGATGCTACAGAATGGAGAAAACATTGATCTCTCTTATAACAAATTTACTCCGAGTAATGATCAAAACATTGGTTGTGAATTACGAAATTTAAATCTTTTTGCGAGCTCTTCACAGGACAATAATTCTGGAACAGTTTCATGTTTAGAGGACGCTTGTAGAAAAACATGGTACTTTCTCCACATCAACTGCGGTGGGAAGGAAGAATTAATTAACGGAACAATCAAGTTTGATGGAGACACAAACACGGGCAAATCGTCATTATTTTTTCAAGGTGGAGAAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGACGATGATAGCTCAGCATACGACTTTATTGCATTAAATTCATCTGCTCTCTCAATGCCAAATTCTGAATTGTACGTGAGGGCACGCATTTCTCCACTCTCTCTTACTTATTATGCATATTGCATGGGTAATGGAAACTACACCGTAAGCCTCCATTTTGCTGAGATAGAGTTTACTAATGACAAAACATACAAAAGCCTCGGCAGACGCGTATTTGATGTCTATGTTCAGAGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTGTTGGCAAACCTTTTGTAAAGAAATTCACTGTTTCTGTGACCAATGGTACTATAGAGATCCGCCTATTTTGGGCTGGGAAGGGGACACATGCAATCCCTGAGAGAGGAGTTTACGGTCCTCTAATTTCAGCCATTTCTATTGAACCTGACTTTATGCCACCATCAGAAAGTGGAAATGGCATGTCTGCCGGTCCAGAGGTTGGAATTGTGACTGCTGTCCTCTTTGTTATTATATTGGTTCAAAGACTCTTGTGGTGGAGAGGCTGCCCAAGAAAGAAAAACACACTTGAAGAAGAGTTGAAGGGCCTAGATCTAGGAACAGGTTCATTTTCATTAAGACAAATCAGAGCGGCCACTAACAATTTTGATGCTGCCAATAAAATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTGTTCTTTCCGATGGCACTGTAATTGCAGTGAAACAACTTTCTTCAAAGTCAAAGCAGGGAAATCGTGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTCATGGATGCTGTATTGAAGGAGATCAACTTTTGCTAATATATGAGTATCTGGAAAATAATAGTCTTGCTCGTGCCTTGTTCGGACCTGAAGAATGTCAACTGGAATTGGATTGGCCAACTAGGCACAAGATTTGTGTTGGTATAGCTAGAGGTTTAGCATATCTTCATGAGGAGTCAAGACTTAAGATCGTTCATCGAGACATCAAAGCTACCAATGTTCTGCTCGATAAAAATCTCAACCCCAAGATTTCCGACTTCGGTTTGGCCAAGCTGGATGAAGAAGAAAATACACACATCAGCACACGGGTGGCTGGAACCTATGGGTATATGGCACCAGAATACGCAATGCGTGGCTACTTAACTGACAAGGCAGATGTTTATAGCTTTGGCATTGTGGCGTTGGAAATAGTCGGTGGTCGAAGCAACACAAGTTTTCGAACTAAGGATGATTGCTTTTACCTTCTTGACCATGCTAATACTTTAAAAGAAAAAGACAGTTTACTAGAGCTTGTGGATCCACGGTTAGGCTCTGAATTGAACAAGAGTGAGGCACTGACAGTGATCAATATTGCTCTCCTGTGCACAAACGTTGCTGCTGCGGACAGACCTGCCATGTCATCAGTGGTGAGCATGCTGGAAGGGAAGGATGCTGTGAAGGAGGTGGTTTCAGACCCTAGTGTTTCAAAACAAGATGTGAATGCAGTGTGGAGCCAAATTTATCGCCAGAAAGTGCAAACAACGAGTGAGAGCTCGACGCATAGTGTGTTGACGGATGGACCATGGACTGGTTCTTCGACTACTGACAGTGAAGTCTATCCCATCCTCAAGGCTTCTAAGTACTAG 2514 41.61 MNHFYGSLPPELGNLPRLSMLIISSNNFSGELPPSLARITSMTDFRISDNHFTGSIPKFIRNWMNLEKIAIRASGLTGPIPSEIGLLTNLVDVRICDLEGDSSPFPPLHTLTKLKVLLLRNCNITGMLPDNLDGLTELQNLDFSFNKITGPIPESFAALKNVKGIYLTGNLLNGSVPPWMLQNGENIDLSYNKFTPSNDQNIGCELRNLNLFASSSQDNNSGTVSCLEDACRKTWYFLHINCGGKEELINGTIKFDGDTNTGKSSLFFQGGENWGFSNTGSFMDDDSSAYDFIALNSSALSMPNSELYVRARISPLSLTYYAYCMGNGNYTVSLHFAEIEFTNDKTYKSLGRRVFDVYVQRKLELKDFNIADAAGGVGKPFVKKFTVSVTNGTIEIRLFWAGKGTHAIPERGVYGPLISAISIEPDFMPPSESGNGMSAGPEVGIVTAVLFVIILVQRLLWWRGCPRKKNTLEEELKGLDLGTGSFSLRQIRAATNNFDAANKIGEGGFGPVYKGVLSDGTVIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLHGCCIEGDQLLLIYEYLENNSLARALFGPEECQLELDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGIVALEIVGGRSNTSFRTKDDCFYLLDHANTLKEKDSLLELVDPRLGSELNKSEALTVINIALLCTNVAAADRPAMSSVVSMLEGKDAVKEVVSDPSVSKQDVNAVWSQIYRQKVQTTSESSTHSVLTDGPWTGSSTTDSEVYPILKASKY 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107599434 107607838 - Tan0007910.5 Tan01g4280 741704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4280 837 CDD STKc_IRAK 504 771 - -
Tan01g4280 837 Gene3D Transferase(Phosphotransferase) domain 1 574 791 - -
Tan01g4280 837 SMART serkin_6 498 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4280 837 Gene3D Ribonuclease Inhibitor 100 209 IPR032675 -
Tan01g4280 837 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 785 IPR051824 -
Tan01g4280 837 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 83 - -
Tan01g4280 837 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 467 573 - -
Tan01g4280 837 SUPERFAMILY Protein kinase-like (PK-like) 482 795 IPR011009 -
Tan01g4280 837 FunFam Putative LRR receptor-like serine/threonine-protein kinase 574 781 - -
Tan01g4280 837 Pfam Protein tyrosine and serine/threonine kinase 501 768 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4280 837 Pfam Leucine Rich Repeat 18 37 IPR001611 GO:0005515(InterPro)
Tan01g4280 837 Gene3D - 234 425 - -
Tan01g4280 837 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 235 426 - -
Tan01g4280 837 Pfam Malectin domain 237 421 IPR021720 -
Tan01g4280 837 Gene3D Phosphorylase Kinase; domain 1 465 573 - -
Tan01g4280 837 Gene3D Ribonuclease Inhibitor 1 99 IPR032675 -
Tan01g4280 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4280 837 SUPERFAMILY L domain-like 2 196 - -
Tan01g4280 837 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515(InterPro)
Tan01g4280 837 ProSiteProfiles Protein kinase domain profile. 498 784 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4276 Tan-Chr1:107599434 Tan01g4280 Tan-Chr1:107599434 0.00E+00 dispersed
Tan01g4280 Tan-Chr1:107599434 Tan01g4284 Tan-Chr1:107670892 0.00E+00 dispersed
Tan01g4279 Tan-Chr1:107599434 Tan01g4280 Tan-Chr1:107599434 2.90E-248 tandem
Tan01g4280 Tan-Chr1:107599434 Tan01g4281 Tan-Chr1:107599434 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67132 PF07714 PK_Tyr_Ser-Thr 1.60E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4280 - - - 0.0