Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4286 ATGGTCGGAACTTGGGACATGGATTTTGCGGTTCGGAATTTTTTGAAGAGTGTTCGTGTTCTTGTTTTTGGGTTTCTGGTTTTTAACTGCTTCGTGGGATTTGGATCGGACGCACAACCTCTGCCTGAACAAGAAGTGAGAGCCCTTCAAGCAATATCTGCAGAGCTAAGGAACTTAAACTGGAATGTCCACCAAAATTCTTGCATTAATGGCGATGGATTTTCCAATAGAGCTATTGATGGTACAGATATTATCAGAGAGGTGAATTGCACTTGCTCCAATGTTTGCTCAGTCACTAGCATCCAGCTAAAGGGTCTGAATCTAACTGGAACTCTGCCAGCAGCATTTGCAAATCTGACTCAGCTGCGACTGATAGATCTTACTCGAAATTTAATATCCGGATCAATCCCAAGAGAGTTTGCTAGGATTCCTCTTGTTGCGTTATCCATGTTGGGCAATCGGCTAAGTGGTCCGATTCCTCCAGAAATTGGTGACATTGCTACACTTGAGCATCTGGTTTTGGAAGACAATCTCCTTGGAGGAAACCTTCCCGAAAGCCTCGGGAGACTGAGCCGGTTGCAAAGATTACTTCTTAGTGCAAATAATTTCACGGGGTCGATTCCAAACTCTTATGGAAACTTGAGGAACTTGACTGATTTTCGGATCGATGGAAATGATGTATCAGGAAAGCTTCCTGAATTTATTGGCAATTGGACCAAACTTAAGAGACTGGATATCCAAGGAACTTCTATGGAGAATCCGATTCCACGTGGCATATCCGAGTTGAAAAACTTAACTGAACTGAGGATAACTGATTTGAAGGGACCAGCAACAAGTTTTCCCAATTTGACTCATTTGACATCTTTAGAAGAATTGGTCCTAAGAAATTGCTTAATCGAGGATCGTATTCCTGGATATATTGGACTGTTTAGTAGATTAAAAACTTTAGATCTAAGCTTCAATGAATTGAATGGTCCAATTCCAGACTCATTTCAGAATCTTGAAAGAGTTACTCAGTTCTTGTTTTTGACCAACAACTCATTAAGTGGCCAAGTACCAAGCTGGATTTTGAACAGTGAAAGGAGCATAGATTTGTCTTACAACAATTTTACAGGGTCCCCTGTTTCTAGTTGTCAACAGTCTGATGTGAACTTGGTTTCAAGTTATTCAACTACAATGAATGAAAATGTTGCTTGGTGCTTGAGGAAGGATCTCCCTTGTCCTAGAGAAACTCGATTTCATTCCTTGTTCATAAATTGTGGAGGCCAAAGAATGGAGCTTGATGGTAATGAATATGAAGAGGATGTAACTGTAGGTGGCAAGTCCAATTTCCTTTCTTTTTCAGACAGATGGGCTTATAGCAGCACTGGTGTTTTCCTGGGAAAGGAGGATGCTGATTACAGAGTAACAAGTAGCAACACGTCTATTACGGGCATCTATCGAACCGCTCGACTCGCACCTCTTTCGCTTAAGTACTACGGACTTTGCTTAAGAAGAGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATAATGTATACTGCTGACCAAACATTCAGCAGCTTGGGAGAGCGCATATTTGATATCTCAATTCAAGGAAATTTGGTTAGAAAAGATTTTAACATAATGGAGGAAGCTGGTGGTATTGGTAACAGTTTTATTTTGGAAGAGCCTAATATTTTGGTGAATGGAAGTACTCTTGAGATCCACTTGTATTGGGCTGGTAAAGGAACAACTGCCATTCCAAACAGAGGGGTTTATGGACCTCTGATATCTGGGATCACAGTGACACCAAATTTTGATGTGGAGACTGGAGTGCTATCAGCTGGAGAGATTGCTGGAGTTGTTGTTGGTTGTTTTGTGTTTGTTGTGTTGGTATTGGCTGTTCTTAGATGGAAAGGTTGCTTGGGTGGAAAGGACACTGAAGACAGTGAATTGAAGGCCCTAGATTTACAGACAGGTTATTTCAGTTTGAGACAAATCAAAGCAGCCACCAAGAACTTCGACCCGACATACAAGATAGGCGAGGGAGGTTTCGGTCCGGTCTACAAGGGAGTATTGTCAGATGGTACTTCAATTGCTGTAAAACAGCTATCCTCTAAATCAAGGCAAGGCAACCGTGAATTCGTGACCGAGATCGGCATGATATCAGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAGTTATTGCTTATATATGAATATCTAGAGAACAATAGTCTTGCTCGTGCCCTTTTTGGCTCTGAGGAGCACCGACTACACTTGGATTGGGCTATAAGAATGAAGATATGCTTGGGAATAGCAAAGGGATTGGCTTACCTTCATGAAGAATCTGTATTGAAAATTGTTCATAGAGATATTAAAGCTACCAATGTGCTACTTGATAAAAATTTGAATGCCAAGATTTCTGATTTTGGGTTGGCTAGACTTGATGAAGAGGAGAACACCCATATCAGCACAAGAATTGCTGGCACAATGTATGTTCATCTCCATCTCTCCCTAATTAATGTCAATTTTTGTTTAATTACTAATGATCTCTTTTATGATATTTACCGCTTTTGA 2586 40.6 MVGTWDMDFAVRNFLKSVRVLVFGFLVFNCFVGFGSDAQPLPEQEVRALQAISAELRNLNWNVHQNSCINGDGFSNRAIDGTDIIREVNCTCSNVCSVTSIQLKGLNLTGTLPAAFANLTQLRLIDLTRNLISGSIPREFARIPLVALSMLGNRLSGPIPPEIGDIATLEHLVLEDNLLGGNLPESLGRLSRLQRLLLSANNFTGSIPNSYGNLRNLTDFRIDGNDVSGKLPEFIGNWTKLKRLDIQGTSMENPIPRGISELKNLTELRITDLKGPATSFPNLTHLTSLEELVLRNCLIEDRIPGYIGLFSRLKTLDLSFNELNGPIPDSFQNLERVTQFLFLTNNSLSGQVPSWILNSERSIDLSYNNFTGSPVSSCQQSDVNLVSSYSTTMNENVAWCLRKDLPCPRETRFHSLFINCGGQRMELDGNEYEEDVTVGGKSNFLSFSDRWAYSSTGVFLGKEDADYRVTSSNTSITGIYRTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMYTADQTFSSLGERIFDISIQGNLVRKDFNIMEEAGGIGNSFILEEPNILVNGSTLEIHLYWAGKGTTAIPNRGVYGPLISGITVTPNFDVETGVLSAGEIAGVVVGCFVFVVLVLAVLRWKGCLGGKDTEDSELKALDLQTGYFSLRQIKAATKNFDPTYKIGEGGFGPVYKGVLSDGTSIAVKQLSSKSRQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNSLARALFGSEEHRLHLDWAIRMKICLGIAKGLAYLHEESVLKIVHRDIKATNVLLDKNLNAKISDFGLARLDEEENTHISTRIAGTMYVHLHLSLINVNFCLITNDLFYDIYRF 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107708313 107721815 + Tan0010517.2 Tan01g4286 741710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4286 861 ProSiteProfiles Protein kinase domain profile. 668 861 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4286 861 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 207 274 - -
Tan01g4286 861 Gene3D Transferase(Phosphotransferase) domain 1 744 837 - -
Tan01g4286 861 Gene3D Phosphorylase Kinase; domain 1 637 743 - -
Tan01g4286 861 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 637 743 - -
Tan01g4286 861 SUPERFAMILY L domain-like 91 368 - -
Tan01g4286 861 Gene3D Ribonuclease Inhibitor 274 402 IPR032675 -
Tan01g4286 861 FunFam Os07g0541700 protein 744 833 - -
Tan01g4286 861 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 28 835 IPR051824 -
Tan01g4286 861 SUPERFAMILY Protein kinase-like (PK-like) 654 834 IPR011009 -
Tan01g4286 861 Gene3D Ribonuclease Inhibitor 46 168 IPR032675 -
Tan01g4286 861 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 413 599 - -
Tan01g4286 861 Pfam Leucine Rich Repeat 192 214 IPR001611 GO:0005515(InterPro)
Tan01g4286 861 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Tan01g4286 861 Pfam Leucine Rich Repeat 169 190 IPR001611 GO:0005515(InterPro)
Tan01g4286 861 Pfam Protein tyrosine and serine/threonine kinase 673 825 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4286 861 Pfam Malectin domain 416 594 IPR021720 -
Tan01g4286 861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4286 861 SMART serkin_6 668 855 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4286 861 Gene3D Ribonuclease Inhibitor 174 273 IPR032675 -
Tan01g4286 861 Gene3D - 414 599 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4286 Tan-Chr1:107708313 Tan01g4289 Tan-Chr1:107748741 6.70E-244 dispersed
Tan01g4285 Tan-Chr1:107708313 Tan01g4286 Tan-Chr1:107708313 0.00E+00 tandem
Tan01g4286 Tan-Chr1:107708313 Tan01g4287 Tan-Chr1:107708313 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67136 PF11721 Malectin 5.60E-39 CL0202 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4286 - - - 0.0