Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4287 ATGGTCGGAACTTGGGACATGGATTTTGCGGTTCGGAATTTTTTGAAGAGTGTTCGTGTTCTTGTTTTTGGGTTTCTGGTTTTTAACTGCTTCGTGGGATTTGGATCGGACGCACAACCTCTGCCTGAACAAGAAGTGAGAGCCCTTCAAGCAATATCTGCAGAGCTAAGGAACTTAAACTGGAATGTCCACCAAAATTCTTGCATTAATGGCGATGGATTTTCCAATAGAGCTATTGATGGTACAGATATTATCAGAGAGGTGAATTGCACTTGCTCCAATGTTTGCTCAGTCACTAGCATCCAGCTAAAGGGTCTGAATCTAACTGGAACTCTGCCAGCAGCATTTGCAAATCTGACTCAGCTGCGACTGATAGATCTTACTCGAAATTTAATATCCGGATCAATCCCAAGAGAGTTTGCTAGGATTCCTCTTGTTGCGTTATCCATGTTGGGCAATCGGCTAAGTGGTCCGATTCCTCCAGAAATTGGTGACATTGCTACACTTGAGCATCTGGTTTTGGAAGACAATCTCCTTGGAGGAAACCTTCCCGAAAGCCTCGGGAGACTGAGCCGGTTGCAAAGATTACTTCTTAGTGCAAATAATTTCACGGGGTCGATTCCAAACTCTTATGGAAACTTGAGGAACTTGACTGATTTTCGGATCGATGGAAATGATGTATCAGGAAAGCTTCCTGAATTTATTGGCAATTGGACCAAACTTAAGAGACTGGATATCCAAGGAACTTCTATGGAGAATCCGATTCCACGTGGCATATCCGAGTTGAAAAACTTAACTGAACTGAGGATAACTGATTTGAAGGGACCAGCAACAAGTTTTCCCAATTTGACTCATTTGACATCTTTAGAAGAATTGGTCCTAAGAAATTGCTTAATCGAGGATCGTATTCCTGGATATATTGGACTGTTTAGTAGATTAAAAACTTTAGATCTAAGCTTCAATGAATTGAATGGTCCAATTCCAGACTCATTTCAGAATCTTGAAAGAGTTACTCAGTTCTTGTTTTTGACCAACAACTCATTAAGTGGCCAAGTACCAAGCTGGATTTTGAACAGTGAAAGGAGCATAGATTTGTCTTACAACAATTTTACAGGGTCCCCTGTTTCTAGTTGTCAACAGTCTGATGTGAACTTGGTTTCAAGTTATTCAACTACAATGAATGAAAATGTTGCTTGGTGCTTGAGGAAGGATCTCCCTTGTCCTAGAGAAACTCGATTTCATTCCTTGTTCATAAATTGTGGAGGCCAAAGAATGGAGCTTGATGGTAATGAATATGAAGAGGATGTAACTGTAGGTGGCAAGTCCAATTTCCTTTCTTTTTCAGACAGATGGGCTTATAGCAGCACTGGTGTTTTCCTGGGAAAGGAGGATGCTGATTACAGAGTAACAAGTAGCAACACGTCTATTACGGGCATCTATCGAACCGCTCGACTCGCACCTCTTTCGCTTAAGTACTACGGACTTTGCTTAAGAAGAGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATAATGTATACTGCTGACCAAACATTCAGCAGCTTGGGAGAGCGCATATTTGATATCTCAATTCAAGGAAATTTGGTTAGAAAAGATTTTAACATAATGGAGGAAGCTGGTGGTATTGGTAACAGTTTTATTTTGGAAGAGCCTAATATTTTGGTGAATGGAAGTACTCTTGAGATCCACTTGTATTGGGCTGGTAAAGGAACAACTGCCATTCCAAACAGAGGGGTTTATGGACCTCTGATATCTGGGATCACAGTGACACCAAATTTTGATGTGGAGACTGGAGTGCTATCAGCTGGAGAGATTGCTGGAGTTGTTGTTGGTTGTTTTGTGTTTGTTGTGTTGGTATTGGCTGTTCTTAGATGGAAAGGTTGCTTGGGTGGAAAGGACACTGAAGACAGTGAATTGAAGGCCCTAGATTTACAGACAGGTTATTTCAGTTTGAGACAAATCAAAGCAGCCACCAAGAACTTCGACCCGACATACAAGATAGGCGAGGGAGGTTTCGGTCCGGTCTACAAGGTAAGCTATGGAGATGTTATCCTCTTTAATTGTGCTCAATGGTTGCATCATTGTTTAATGAGCAGTCATCTTTCCTGCAATGGTTGTGTTCATTTTATAATCCAAGCTAAAATGAATGGTTTAAGTAGATATTACATATTTGGGACTGGCAGGGAGTATTGTCAGATGGTACTTCAATTGCTGTAA 2238 41.02 MVGTWDMDFAVRNFLKSVRVLVFGFLVFNCFVGFGSDAQPLPEQEVRALQAISAELRNLNWNVHQNSCINGDGFSNRAIDGTDIIREVNCTCSNVCSVTSIQLKGLNLTGTLPAAFANLTQLRLIDLTRNLISGSIPREFARIPLVALSMLGNRLSGPIPPEIGDIATLEHLVLEDNLLGGNLPESLGRLSRLQRLLLSANNFTGSIPNSYGNLRNLTDFRIDGNDVSGKLPEFIGNWTKLKRLDIQGTSMENPIPRGISELKNLTELRITDLKGPATSFPNLTHLTSLEELVLRNCLIEDRIPGYIGLFSRLKTLDLSFNELNGPIPDSFQNLERVTQFLFLTNNSLSGQVPSWILNSERSIDLSYNNFTGSPVSSCQQSDVNLVSSYSTTMNENVAWCLRKDLPCPRETRFHSLFINCGGQRMELDGNEYEEDVTVGGKSNFLSFSDRWAYSSTGVFLGKEDADYRVTSSNTSITGIYRTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMYTADQTFSSLGERIFDISIQGNLVRKDFNIMEEAGGIGNSFILEEPNILVNGSTLEIHLYWAGKGTTAIPNRGVYGPLISGITVTPNFDVETGVLSAGEIAGVVVGCFVFVVLVLAVLRWKGCLGGKDTEDSELKALDLQTGYFSLRQIKAATKNFDPTYKIGEGGFGPVYKVSYGDVILFNCAQWLHHCLMSSHLSCNGCVHFIIQAKMNGLSRYYIFGTGREYCQMVLQLL 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107708313 107721815 + Tan0010517.3 Tan01g4287 741711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4287 745 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 28 687 IPR051824 -
Tan01g4287 745 Pfam Leucine Rich Repeat 169 190 IPR001611 GO:0005515(InterPro)
Tan01g4287 745 Pfam Leucine Rich Repeat 192 214 IPR001611 GO:0005515(InterPro)
Tan01g4287 745 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Tan01g4287 745 Gene3D - 414 599 - -
Tan01g4287 745 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 413 599 - -
Tan01g4287 745 Gene3D Ribonuclease Inhibitor 42 274 IPR032675 -
Tan01g4287 745 Pfam Malectin domain 416 594 IPR021720 -
Tan01g4287 745 SUPERFAMILY L domain-like 58 396 - -
Tan01g4287 745 Gene3D Phosphorylase Kinase; domain 1 647 701 - -
Tan01g4287 745 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 207 274 - -
Tan01g4287 745 Gene3D Ribonuclease Inhibitor 275 402 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4287 Tan-Chr1:107708313 Tan01g4289 Tan-Chr1:107748741 1.00E-160 dispersed
Tan01g4286 Tan-Chr1:107708313 Tan01g4287 Tan-Chr1:107708313 0.00E+00 tandem
Tan01g4287 Tan-Chr1:107708313 Tan01g4288 Tan-Chr1:107736804 4.70E-20 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4287 - - - 0.0