Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4288 ATGGAGGAAGCTGGAGGTGTGGGTAAAAGCTTTGTTATTGAAGAGCCTAATATTGTAGTAAGTACCAACACTCTTGAAATCCACTTATATTGGGCTGGTAAAGGAACAACTGCCATTCCTGTGAGCGGGATCTGCAATTACAACTTTGACGTGAAAACTAGAGAACTATCAGCGGGAGCTGTTGCTGGCATTGTTGTTGGGCCCGAGGAGCACTTACTACATTTGGAATGGCCAGTAAGAATGAAGATATGCTTGGGAATAGCAAAGGGGTTGGCTTACCTACATGAAGAATCTAGATTGAAAATTGTTCATAGAGATATTAAAGCTACTAATGTTCTACTTGATAAAAATTTGAATGCTAAGATCTCAGACTTTGGGTTGGCTAAGCTTGATGAACAGGAGAATACTCATATCAGCACAAGAATTGCAGGCACAATAGGTTACATGGCTCCTGAATATGTAACGAGGGGTTATTTGACTGATAAAGCCGATGTTTACCGCTTCGGAATTGTGGCCTTAGAAATTGTTAGTGGAAAAAGCAACACAAATTATAGACCAAGAGAAGAGTTTGTTTATCTTCTTGATTGGGCTTGTGTTCTACAAAAGGAAGGAAACCTACTGGAACTGGTTGATCTAAATCTAGGCTCAAATTACTCAAAGGAAGAGGTCATGAAGATACCTTCTATGTCTTCAGTGGTTAGCATGCTTGAAGGCAAAATGGAAGTCCGAACACCGAGCATCAAGCACAATGCGATTGATCAAGATGCCTTTGTATTAAATTATATGGGGTTTCAACTTAAAACCAATTGA 810 39.75 MEEAGGVGKSFVIEEPNIVVSTNTLEIHLYWAGKGTTAIPVSGICNYNFDVKTRELSAGAVAGIVVGPEEHLLHLEWPVRMKICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDKNLNAKISDFGLAKLDEQENTHISTRIAGTIGYMAPEYVTRGYLTDKADVYRFGIVALEIVSGKSNTNYRPREEFVYLLDWACVLQKEGNLLELVDLNLGSNYSKEEVMKIPSMSSVVSMLEGKMEVRTPSIKHNAIDQDAFVLNYMGFQLKTN 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 107736804 107742176 + Tan0002758.1 Tan01g4288 741712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4288 269 Gene3D Transferase(Phosphotransferase) domain 1 68 259 - -
Tan01g4288 269 SMART serkin_6 4 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4288 269 Pfam Protein tyrosine and serine/threonine kinase 75 195 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4288 269 SUPERFAMILY Protein kinase-like (PK-like) 75 236 IPR011009 -
Tan01g4288 269 ProSiteProfiles Protein kinase domain profile. 1 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4288 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 102 114 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4288 269 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 57 240 - -
Tan01g4288 269 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 71 246 IPR051824 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4288 Tan-Chr1:107736804 Tan01g4284 Tan-Chr1:107670892 1.40E-70 dispersed
Tan01g4287 Tan-Chr1:107708313 Tan01g4288 Tan-Chr1:107736804 4.70E-20 tandem
Tan01g4288 Tan-Chr1:107736804 Tan01g4289 Tan-Chr1:107748741 2.30E-97 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67137 PF07714 PK_Tyr_Ser-Thr 3.90E-26 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4288 - - - 0.0