Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4317 ATGACCTGCTGGAAGCACACACTTTCTTCCATCCCTCAAAATCTCAGCCCCCCATTGAACCATTTCTCTTGCTTCTTTTCTCACAGTCACAATCCCAAACATTTCAGCTGTATTTTCTTTCAACGCCCACCAATGTCACCGTCTTCTGTAAAAATCGTAGCCGAGTACGCCAAGTCGAATCGCTCTACGTGCAAGAACTGCTCCAAAACCATTCCTGCAAAGGCGCTGAGGTTGGGTTTTGTGAGCAGAGATGGGCGGGGATTCGACATGACCCGATGGTTTCATTCCGATTGCGCTTCGTTTGGTTCAGACCCTGCTTGTTCCGCTGAGGAGATTAATGGGTTCGCACTCTTGAAGGGTAGTGACCAGGAAGCTCTGAAGAAATTGGTTAGTAGAAGCCAAGAATCTAAGGTCCGCAAAAGGGATGTGGATGAAGAAGATGGAATTGAAGAAAGAGATCCAAAGAAAGTCGAGTTGTCTACCCCAAGTTTGCAGCCAAAGTTAGATCTCGTCCTTACAGCTTCTGATATAAAAACCAAGTATAAGGAGGCTACCCTTTTACCTAAATGGAAGGCGTTCCAGACAATCATCTTTCTTGAGCAGGATGATGGGCTACATCATTCAAGTAAAATAGCTGCATTTGATTTTGATGGCTGTCTGGCAAACACATCTGTTAAAAGAGTAGGTGCAGATGCGTGGTCTCTGATGTACCCTTCAATACCACAAAAACTTCAGAGCTTGTACAATGATGGCTACAAGCTGGTAATATTTACGAACGAATCCAACATTGATAGATGGAAGAACAAGAGACAGGTTGCTGTGGACTCCAAGCTTGGGCGTCTCAATAATTTCATCAGTAAAGTCAATGTCCCAATTCAGGTAAATACCAGACCAGAATCACCAGACACAGCAATTGCATCCATTCACACTGCAACCATGTTGAATTGTGAGTGTATGATGTTGTTGTTGTGTGGAATGTGGATGCAGGTGTTTGTTGCCTGTGGGATTGGAAGCGGATCGGGTAAATCTGAAGATGACCCATTTAGAAAACCGAAACCCGGGATGTGGTACATCATGGAGAACCACTTCAACGATGGCATCCCCATTGATCTCGACCAATGCTTTTACGTGGGAGATGCAGCTGGAAGAGCCAAGGATCACAGTGATGCTGATATCAAGTTTGCTCAGGCCCTTGGGTTGAAGTTTTATGTTCCTGAAGAATTTTTTGTTGAGTAA 1236 44.58 MTCWKHTLSSIPQNLSPPLNHFSCFFSHSHNPKHFSCIFFQRPPMSPSSVKIVAEYAKSNRSTCKNCSKTIPAKALRLGFVSRDGRGFDMTRWFHSDCASFGSDPACSAEEINGFALLKGSDQEALKKLVSRSQESKVRKRDVDEEDGIEERDPKKVELSTPSLQPKLDLVLTASDIKTKYKEATLLPKWKAFQTIIFLEQDDGLHHSSKIAAFDFDGCLANTSVKRVGADAWSLMYPSIPQKLQSLYNDGYKLVIFTNESNIDRWKNKRQVAVDSKLGRLNNFISKVNVPIQVNTRPESPDTAIASIHTATMLNCECMMLLLCGMWMQVFVACGIGSGSGKSEDDPFRKPKPGMWYIMENHFNDGIPIDLDQCFYVGDAAGRAKDHSDADIKFAQALGLKFYVPEEFFVE 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 108037952 108042752 + Tan0021652.2 Tan01g4317 741741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4317 411 SUPERFAMILY HAD-like 192 409 IPR036412 -
Tan01g4317 411 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 52 134 IPR001510 GO:0003677(InterPro)|GO:0008270(InterPro)
Tan01g4317 411 CDD HAD_PNP 210 409 - -
Tan01g4317 411 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 51 134 - -
Tan01g4317 411 NCBIfam HAD-IIIA family hydrolase 210 297 IPR006549 -
Tan01g4317 411 NCBIfam DNA 3'-phosphatase 198 409 IPR006551 -
Tan01g4317 411 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 43 409 - GO:0003690(PANTHER)|GO:0006281(PANTHER)|GO:0046403(PANTHER)|GO:0046404(PANTHER)|GO:0046939(PANTHER)
Tan01g4317 411 MobiDBLite consensus disorder prediction 137 158 - -
Tan01g4317 411 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 55 129 IPR001510 GO:0003677(InterPro)|GO:0008270(InterPro)
Tan01g4317 411 Gene3D - 188 411 IPR023214 -
Tan01g4317 411 MobiDBLite consensus disorder prediction 137 160 - -
Tan01g4317 411 Gene3D - 45 145 IPR036957 GO:0003677(InterPro)|GO:0008270(InterPro)
Tan01g4317 411 Pfam Polynucleotide kinase 3 phosphatase 210 409 IPR013954 -
Tan01g4317 411 SMART zf_PARP_3 55 131 IPR001510 GO:0003677(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4317 K08073 - - csv:101207352 590.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4316 Tan-Chr1:108037952 Tan01g4317 Tan-Chr1:108037952 5.20E-217 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g109 . . . . . Bpe08g00982 . . . . . Cma09g00822 . Car09g00740 Sed04g2434 . . Bhi09g03513 Tan01g4317 Cmetu07g1764 . Hepe01g1442 Mch11g1008 . Cla11g01709 Cam11g1777 Cec11g1798 Cco11g1803 Clacu11g1936 Cmu11g1747 Cre11g2155 Cone6ag0195 Cone9ag0226 . . Lsi04g02011 Csa04g02284 Chy07g00022 Cme07g00535 . . . . . . Bma07g01141 . . . Cmo09g00817 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010926 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 2 1 29