Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4331 ATGTCGCATTCTGGGAATCCCATGTCGGAGGTTCGGTTTGATGATCTTTCCGATCGGTTTCGAGATTCGGTGAGTTGTGAAGCCAACAAACCGGATTTTCGAGAGCTAGATCTGGGTTCCCCTGTTTCGCCATTGCGGACTCGCAACCAGACTGGCGGTGGCCCCGCCGCGAGTAGTAGTTCGAGCTCGTCGGGATCGGTTTCCGGCCGGAATGGACCGAACCCAGTTGCGAAGAGATCCGATTCGGGTCCTAATAATCACTCCGGCGAGCTCTCTGGGTCTAGCGAGAGCAGCCCAACTGCTGCCGAGAGCCTCCGATCCATCGGAACCCCTAGAAATTTTAAGTCGGGTCATACTAGATCCGATTCCGGCTCGAATCATCCGTTAATCTATTCGGGTCAGTCTCAAAGCTCCGTTACTTCTCCGTCGAATGTGCTTCCCACCGGCAATATTTGCCCTTCAGGAAGGATCTTGAAAACGAGCATGCCGTCGACGAATCGGAGCTCGAGAACCGACGTTTTGGGTTCCGGGTCAGGGAATTATGGCCATGGGAGCATAATGCGGGGCCTCGGCGGTGTCAAAACTGGCGCCGTTGAATCGGTTAGTAATGCCAGTTTGAGGGCTGGTGGTGGTGGTGGTGGTAGTGGAGACTCGTTGAAGAGGGCAAAACAAAGTGGGGATCCGGAGGAGTTGAAGAGAGCTGGAAATGAACAGTACAAAAGGGGGCATTTCGCTGAGGCTTTGAGTCTGTATGATAGAGCCATTGCAATTTCTCCGGCCAATGCAGCTTACCGGAGCAACCGAGCGGCTGCCTTGACCGGTCTCGGGCGGCTCGGGGAGGCAGTTGGCGAGTGCGAGGAGGCGGTGAGATTGGATCCCAATTATGTGAGGGCTCATCAGCGTTTGGCATCTTTGTTTCGTAGGTTAGGACAGGTGGAGAATGCAAGGAAACACCTTTGTTTTCCAGGTGCTCAGCCGGATCCAAATGAGCTGCTGAGATTGCAGGTAGTAGAGAGGCATATAAGTAGATGTGGGGATGCCCGTCGAGTTAGAGATTGGAGAAGTGTATTGAAGGAGGCTGATGCTGCGATTGCTGGTGGAGCTGATTCTTCGCCTCAGATGTTTCTGAGTAGAGTGGAAGCTCTTTTAAAGCTTCATCAGATTGAAGATGCTGAATCCAACCTGTTTAGTATTCCGAAATTACATCCATCAACCAACTCTTGCTTGCAAACAAAGTTTTTCGGAATGCTTTCAGAAGCTTACTCTCACTTCATTCATGCCCAAATTGAGATGGCGTTAGGAAGGTTTGAGAATGCAGTTACGGCTGCTGAAAAAGCTGGGCAGATTGATCCTCGGAATGTAGAAGTGGCAGTGCTGCTTACTAACGTGCGCCTGGTCGCAAGAGCTCGTACTCGTGGCAATGATCTCTTTAAATCAGAAAGGTATACAGAAGCTTGCTCAGCATACGGGGAAGGTCTTAAGCTCGACCCGTCGAACTCGGTCCTCTACTGCAACCGTGCAGCCTGTTGGTTTAAACTTGGGATGTGGGAGCGGTCTATCGAAGACTGTAATCAAGCATTACTTATCCAACCAACTTACACAAAAGCCCTCCTTCGAAGGGCTGCCTCGAATAGTAAGCTTGAAAGGTGGGAGGAGGCTATTAGAGATTATGAAGCTTTAAGGAGGGAGCTTCCAGATGACAATGAAGTTGCTGAATCTCTTTTTCATGCTCAAGTTGCATTAAAGAAATCTCGTGGGGAAGAAGTTCATAATCTGAAGTTTGGTGGCGAAGTCGAGGAAGTGTCGAGCCTAGATCAGTTCAGAGCTGCCATATCGTTCCCAGGCGTCACTGTGGTTCATTTCAAAGCAGCATCTGATTTACAATGCAAGCAGATATCGCCATTTGTTGACACCCTTTGTCGTCGCTACCCTTCCATTAATTTCCTCAAGGTGGATCTTGAAGAAAGTCCAGCAATTGCAGATACAGAAAACGTAAGGATCGTACCGACATTCAAGATTTACAAAAGTGGAAATCGAGTGAAAGAGATCATATCTCCGACACGCGACATGTTAGAGCACTCAGTGAGGTATTATAGCTTATAG 2103 49.45 MSHSGNPMSEVRFDDLSDRFRDSVSCEANKPDFRELDLGSPVSPLRTRNQTGGGPAASSSSSSSGSVSGRNGPNPVAKRSDSGPNNHSGELSGSSESSPTAAESLRSIGTPRNFKSGHTRSDSGSNHPLIYSGQSQSSVTSPSNVLPTGNICPSGRILKTSMPSTNRSSRTDVLGSGSGNYGHGSIMRGLGGVKTGAVESVSNASLRAGGGGGGSGDSLKRAKQSGDPEELKRAGNEQYKRGHFAEALSLYDRAIAISPANAAYRSNRAAALTGLGRLGEAVGECEEAVRLDPNYVRAHQRLASLFRRLGQVENARKHLCFPGAQPDPNELLRLQVVERHISRCGDARRVRDWRSVLKEADAAIAGGADSSPQMFLSRVEALLKLHQIEDAESNLFSIPKLHPSTNSCLQTKFFGMLSEAYSHFIHAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLTNVRLVARARTRGNDLFKSERYTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGMWERSIEDCNQALLIQPTYTKALLRRAASNSKLERWEEAIRDYEALRRELPDDNEVAESLFHAQVALKKSRGEEVHNLKFGGEVEEVSSLDQFRAAISFPGVTVVHFKAASDLQCKQISPFVDTLCRRYPSINFLKVDLEESPAIADTENVRIVPTFKIYKSGNRVKEIISPTRDMLEHSVRYYSL 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 108145997 108149969 - Tan0014097.2 Tan01g4331 741755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4331 700 Pfam Tetratricopeptide repeat 234 295 - -
Tan01g4331 700 MobiDBLite consensus disorder prediction 43 178 - -
Tan01g4331 700 MobiDBLite consensus disorder prediction 26 180 - -
Tan01g4331 700 SUPERFAMILY Thioredoxin-like 503 692 IPR036249 -
Tan01g4331 700 Coils Coil 540 560 - -
Tan01g4331 700 Pfam Thioredoxin 605 688 IPR013766 -
Tan01g4331 700 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 28 692 IPR044534 GO:0005737(PANTHER)
Tan01g4331 700 ProSiteProfiles TPR repeat profile. 228 261 IPR019734 GO:0005515(InterPro)
Tan01g4331 700 CDD TRX_family 605 684 - -
Tan01g4331 700 Pfam Tetratricopeptide repeat 422 452 IPR019734 GO:0005515(InterPro)
Tan01g4331 700 MobiDBLite consensus disorder prediction 222 238 - -
Tan01g4331 700 Gene3D Glutaredoxin 592 698 - -
Tan01g4331 700 Pfam Tetratricopeptide repeat 536 566 IPR019734 GO:0005515(InterPro)
Tan01g4331 700 Gene3D Tetratricopeptide repeat domain 226 586 IPR011990 GO:0005515(InterPro)
Tan01g4331 700 SUPERFAMILY TPR-like 227 456 IPR011990 GO:0005515(InterPro)
Tan01g4331 700 Pfam Tetratricopeptide repeat 502 533 IPR019734 GO:0005515(InterPro)
Tan01g4331 700 MobiDBLite consensus disorder prediction 204 238 - -
Tan01g4331 700 FunFam TPR repeat-containing thioredoxin TTL4 592 699 - -
Tan01g4331 700 SMART tpr_5 262 295 IPR019734 GO:0005515(InterPro)
Tan01g4331 700 SMART tpr_5 500 533 IPR019734 GO:0005515(InterPro)
Tan01g4331 700 SMART tpr_5 466 499 IPR019734 GO:0005515(InterPro)
Tan01g4331 700 SMART tpr_5 228 261 IPR019734 GO:0005515(InterPro)
Tan01g4331 700 SMART tpr_5 534 567 IPR019734 GO:0005515(InterPro)
Tan01g4331 700 SMART tpr_5 420 453 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4331 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4331 Tan-Chr1:108145997 Tan02g0159 Tan-Chr2:1418277 1.10E-199 dispersed
Tan01g4330 Tan-Chr1:108145997 Tan01g4331 Tan-Chr1:108145997 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005247 2 2 2 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38