Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4335 ATGGATTTCCAGGATGATGGCTTCGAGGGATCTGCAAACGAAGACATTATTTTTAAGGAGGTTTTCTTTGGGAATGGCTCTAGCCACCTTAATAAGAGATGTCCTTGCAAGGCATTTAGTTATAAACACGAGCCCTGTAAGATGAATGATGCATCTTTATGTTCAAGTAGTGAACTCTCAACAGTGTCCAGTCATACATATTCAAGAAATATAAAGGTTGATGAATGCTACAATGCTACTGAGAATATTAGGACCAGTTCTGCACCTAATAGTTTTCCATTCAAATGCCCTTCGGTGGAAGACAATGATGAGAATGCAAGTGCTAAGCGAATAAAACTTTCAACTGATGAACCGTCTGATTCTATTCCTGATCCAGGTAAGGTTATGAACTCATCAGAAATTATAAGGGAAGCTGCTTCTACTAATTGCTGTCCAGCTGAGGATTGTGATTCTGAATCATTCACATTTCACATTGTAGAATCATCTAGACAGGGTATTATATCAAGTTGCTATCTGTTAAAGCACTTTGTAGAAATGGACAGTAATATGGGTGAACCTGATGTCCCCAAATGCACATCGTTGAATTTAGAAGGTCACAAACCCAATATGGTGAATAAAGTTAGTGCTTCGCCTGTTTCCCAAGAGAGCTCCATGACCAGGCTCTTGGTAGCAAGTCCTTCCGATACATTCAACGAGAAGTTTGGATCTCCATTACATCTGGAGGAGGCAGGAGAAATGCCAGAACTGGACAGTTCCTTGAAGACAGATTTGATGAGGGATCCTCGTCCTCTTCTCCACTATCATGTTGTTCACTTACTAATTGCAGCTGGATGGTCTATTGAAAGGCGCAAAAGACCTTGCAGGCGCTATTTGGAAACAATTTATAGATCGCCCCAGGGAAGGGCCATTCGTGAATTTTCCAAGGCTTGGAGGGTTTGTGGTGAATTCCTATTTGCTGATAGATGTAGTTTTGTAAAGGAAATTGATAGCAAGGAATGGACTGGCATTCATCAATTCTTATTTGATCTTTCTGAAACACTGTTACAGGTTGGGAAGGAAAGTCAATTAGGAGCTTTAACTTCACTGGCTCATAGTTGGGTTATTCTAGATCCCTATGTTCAGGTTGTTTTCATTGACAGAAAGATCGGTACACTTAGGAAGGGAGATTTAGTTAGAGCTACCCGTAGTATTGGGGTCATTGGGAGCAGTAAGACTGATACTTTTGTGACATTAACAAATGACAATAGTATTTGTAACCTATCTGCTGACAAAAATGCATCACCACTCCATGATCATTCACCGTCTGCCAAGAGTGCATTAACTGAGGCAGCATTAAAAGATCTTGATGGTGGCAATTGTGCTTCTGATGAGCAAACCTGTGATACAAGTTTCTCCAATTACTATGGGCATTCAGAAAATGGAACAATGAAATTCTCGACAAGGGTGTCTAATTATGTCCTTGATGTAGGGAATGGTCTGAATTCCATGGGCAGTCATGGTAATGAACCTGGGAACAAGATACACAGTGAGGACTTAACTTCATTACCTTCTTATTTGTCAGGTTCCACTTGCAAACCTAAATGTCTGCCTGATGGTCCTGTTCCGTCGGGAAATTCAGATAATGTTGTCAGAGTTTCTGGCCCTACATCTACTGATGAGGATAGCGCTTTGTATTGTTCGGATGAACAGAGCTCTGAAAATCAAGTTGAAAAGCCTAATGAAATGGTGAAAAATGTACTGATGCATTGCCTTGGAGAAGAAAAAAAAGTGGACATCCCACTAGATGATAAGGCGGAAAATAATTTGGAAGAATCTCTGAATGACTTTCCAAACTATACAAGTGATGATTTATCTCATTCTTGTGCTTCAGGGGTTGTACAGAAGTCTACACAAAATGAAGGTGGGCAGCACTTTTCAGCTTCAAAGTTCAAAACAGAGATTAAAGCTTCTGCTGTACATTCTATTTTGAAGAAGAAAGGGCGTAGAAAGTGTAAAAAGATATCTGAAATTAATCCTACCTTGCCACCTCAGGTCGATATTGTTAGTGTGACTCCAGGAAAGAAAACTGAGTTGTGGGATATTGATGCGAATTGTTCTCAGTTGTATATGATAGAAGACCAGAAGTCCCAAATAGCTGATACTAAAAACATGGACAACCATGAGAAGAGCTTGTCTCTCAGTCCTATTTCACTCCATTCTGAGAGGAAAGGTTCAAAGTTCAAAAAGATTTATGCCAGTCTTAGAGGTTCGAAACCCAGAAAGAAGAAATTCAATGAATGTCAAATTGAAGATGATGACCTATTAGTTTCAGCCATAATTAGAAACAAAGATGTCAGTTCAAGTGCTGCTGGATTTTCCCCTATAAGAAAATTCTTAAAATCTAGAGCAAAAACGAACAGCAAAAGTCAAAAGAGTAGTTGTAAGCTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGGAAGTGGTATACCATTGGGGCTAGAACAGTGTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCAAATGACATGATCCAATATCAAAACCCCAAGGATGATAGTGTAGTTAAATATGGTAGAATTACTGGAGATGGCATCATCTGCAACTGCTGCAGTGAGCTACTCTCTATATCTGAATTTAAAAGTCATGCGGGTTTCAAATTTAATCGTCCTTGTTTGAATCTTTTCTTGGACTCCGGGAAGTCTTTCATGTTATGTCAGCTTCAAGCCTGGTCAACTGAGTACAAGACAAGGAGGAGTAGGACCAGAACAGTTCAAGTTGACGAAGATGATCGAAATGATGATTCATGTGGAATTTGTGGTGATGGGGGAGAACTAATATGCTGTGATAATTGCCCCTCTACATTCCATCATTCTTGTTTGTCAGTTCAGGAGCTCCCTGAAGGCAACTGGTATTGCTTAAACTGTACTTGCCGAATATGTGGCGATCTGGTGAATTATAAAGAGTCTTCAAGTTCTTCTGATGCACTAAAATGTTCTCAGTGCGAGCAAAAGTATCATGGGCAATGCCTGAAAGAAAAAAAAGACTGCAATCCTGGAGTAGAATCTCATAATTGGTTTTGTAGCGGGAGTTGCCAGAAGATTTACACAGGTCTTCAATCACGACTTGGGTTGATTAATCAGACTGCAGACGGGTTTTCATGGATTCTTCTTAGATGTATTCATAATGACCAGAAAATTTTATCTACCCCACGCTTAGCTATGATGGCAGAATGCAACTCCAGATTAGTAGTGGCTCTTACTATAATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGAACAGGAATCGATATGATACCACATCTGGTGTACAGCTGGAAGTCAAGTTTTCCTCGTCTGGACTTTCATGGATTTTACACCGTGATACTTGAGAAAGATGATGTGCTGCTATGTGTAGCATCTATCAGGGTACATGGATCAGAATTTGCTGAGATGCCCCTTATTGCAACTTGTAGTAAATATCGTCGCCAGGGAATGTGTAGGCGTCTACTGAATGCTATAGAAGAGATGCTATTGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTGGAGACATGGACTGAAGGTTTTGGCTTCATACCTGTGGAAGATGTTGAGAAACAAAGTCTTCACAGGTTCAATTTGATGGTGTTTCCTGGAACGATACTACTAAAAAAAGCCTTGTATGTAAGTGGTCAAAATACAGAGAAAACAGAAGGAATTCATTCAGGAGGACAACTTGACGCTGATTCAAAACAACAATGTGATGTTTACTCCTGTCCTGACGAAGCGTGTCCTAGAATGGAAATGAAATGTTTAAAATATCAAGAATTGCAAGAACACAATGGTGAAAAGACAACGAACAATCACGAGGAAAGTCCAGCTCCGATCGATTCATCCACGTTGCAGTTGGTTGAATCAAATAAAATGGATACTTCTTCAGAACAAAAGTCTGTTCAGTCAGTACTACAATCTGATGGAAACTGTTGCACTGACAAAGTTGGTGCCACAACTGAAACACGCACCACCCACGAGGGGAAAGAGTCGTTAGATGTAGAAGTTGGCGCAGAACGCAGCGTTCAGGTTTCGGAAGGAAAGAGCTGGGATAAAGAAGTTCATGCAGCCGCTATGACAAGATTAGTCGAACCTTTTGTTCTAACTTAG 4197 40.22 MDFQDDGFEGSANEDIIFKEVFFGNGSSHLNKRCPCKAFSYKHEPCKMNDASLCSSSELSTVSSHTYSRNIKVDECYNATENIRTSSAPNSFPFKCPSVEDNDENASAKRIKLSTDEPSDSIPDPGKVMNSSEIIREAASTNCCPAEDCDSESFTFHIVESSRQGIISSCYLLKHFVEMDSNMGEPDVPKCTSLNLEGHKPNMVNKVSASPVSQESSMTRLLVASPSDTFNEKFGSPLHLEEAGEMPELDSSLKTDLMRDPRPLLHYHVVHLLIAAGWSIERRKRPCRRYLETIYRSPQGRAIREFSKAWRVCGEFLFADRCSFVKEIDSKEWTGIHQFLFDLSETLLQVGKESQLGALTSLAHSWVILDPYVQVVFIDRKIGTLRKGDLVRATRSIGVIGSSKTDTFVTLTNDNSICNLSADKNASPLHDHSPSAKSALTEAALKDLDGGNCASDEQTCDTSFSNYYGHSENGTMKFSTRVSNYVLDVGNGLNSMGSHGNEPGNKIHSEDLTSLPSYLSGSTCKPKCLPDGPVPSGNSDNVVRVSGPTSTDEDSALYCSDEQSSENQVEKPNEMVKNVLMHCLGEEKKVDIPLDDKAENNLEESLNDFPNYTSDDLSHSCASGVVQKSTQNEGGQHFSASKFKTEIKASAVHSILKKKGRRKCKKISEINPTLPPQVDIVSVTPGKKTELWDIDANCSQLYMIEDQKSQIADTKNMDNHEKSLSLSPISLHSERKGSKFKKIYASLRGSKPRKKKFNECQIEDDDLLVSAIIRNKDVSSSAAGFSPIRKFLKSRAKTNSKSQKSSCKLLLRSLGNGEKNYKDGKWYTIGARTVLSWLLDAGVISSNDMIQYQNPKDDSVVKYGRITGDGIICNCCSELLSISEFKSHAGFKFNRPCLNLFLDSGKSFMLCQLQAWSTEYKTRRSRTRTVQVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSVQELPEGNWYCLNCTCRICGDLVNYKESSSSSDALKCSQCEQKYHGQCLKEKKDCNPGVESHNWFCSGSCQKIYTGLQSRLGLINQTADGFSWILLRCIHNDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKSSFPRLDFHGFYTVILEKDDVLLCVASIRVHGSEFAEMPLIATCSKYRRQGMCRRLLNAIEEMLLSFKVKKLVIAAIPSLVETWTEGFGFIPVEDVEKQSLHRFNLMVFPGTILLKKALYVSGQNTEKTEGIHSGGQLDADSKQQCDVYSCPDEACPRMEMKCLKYQELQEHNGEKTTNNHEESPAPIDSSTLQLVESNKMDTSSEQKSVQSVLQSDGNCCTDKVGATTETRTTHEGKESLDVEVGAERSVQVSEGKSWDKEVHAAAMTRLVEPFVLT 1398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 108220616 108247695 - Tan0005162.1 Tan01g4335 741759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4335 1398 PANTHER PHD FINGER PROTEIN 12 634 1342 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Tan01g4335 1398 Pfam PHD-finger 942 981 IPR019787 -
Tan01g4335 1398 CDD NAT_SF 1134 1194 - -
Tan01g4335 1398 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1076 1240 IPR000182 GO:0016747(InterPro)
Tan01g4335 1398 MobiDBLite consensus disorder prediction 539 570 - -
Tan01g4335 1398 Pfam Tify domain binding domain 864 914 IPR032308 -
Tan01g4335 1398 FunFam Increased DNA methylation 1 932 984 - -
Tan01g4335 1398 SUPERFAMILY FYVE/PHD zinc finger 919 983 IPR011011 -
Tan01g4335 1398 MobiDBLite consensus disorder prediction 529 570 - -
Tan01g4335 1398 CDD PHD2_CHD_II 941 981 - -
Tan01g4335 1398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 926 999 IPR013083 -
Tan01g4335 1398 ProSiteProfiles Zinc finger PHD-type profile. 939 984 IPR019787 -
Tan01g4335 1398 Gene3D - 1114 1226 - -
Tan01g4335 1398 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1129 1216 IPR016181 -
Tan01g4335 1398 SMART PHD_3 941 982 IPR001965 -
Tan01g4335 1398 SMART PHD_3 983 1038 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4335 Tan-Chr1:108220616 Tan06g0978 Tan-Chr6:8594590 3.70E-111 dispersed
Tan01g4335 Tan-Chr1:108220616 Tan01g4336 Tan-Chr1:108220616 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26552 PF16135 TDBD 6.30E-17 No_clan Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4335 - - - 0.0