Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4335 ATGGATTTCCAGGATGATGGCTTCGAGGGATCTGCAAACGAAGACATTATTTTTAAGGAGGTTTTCTTTGGGAATGGCTCTAGCCACCTTAATAAGAGATGTCCTTGCAAGGCATTTAGTTATAAACACGAGCCCTGTAAGATGAATGATGCATCTTTATGTTCAAGTAGTGAACTCTCAACAGTGTCCAGTCATACATATTCAAGAAATATAAAGGTTGATGAATGCTACAATGCTACTGAGAATATTAGGACCAGTTCTGCACCTAATAGTTTTCCATTCAAATGCCCTTCGGTGGAAGACAATGATGAGAATGCAAGTGCTAAGCGAATAAAACTTTCAACTGATGAACCGTCTGATTCTATTCCTGATCCAGGTAAGGTTATGAACTCATCAGAAATTATAAGGGAAGCTGCTTCTACTAATTGCTGTCCAGCTGAGGATTGTGATTCTGAATCATTCACATTTCACATTGTAGAATCATCTAGACAGGGTATTATATCAAGTTGCTATCTGTTAAAGCACTTTGTAGAAATGGACAGTAATATGGGTGAACCTGATGTCCCCAAATGCACATCGTTGAATTTAGAAGGTCACAAACCCAATATGGTGAATAAAGTTAGTGCTTCGCCTGTTTCCCAAGAGAGCTCCATGACCAGGCTCTTGGTAGCAAGTCCTTCCGATACATTCAACGAGAAGTTTGGATCTCCATTACATCTGGAGGAGGCAGGAGAAATGCCAGAACTGGACAGTTCCTTGAAGACAGATTTGATGAGGGATCCTCGTCCTCTTCTCCACTATCATGTTGTTCACTTACTAATTGCAGCTGGATGGTCTATTGAAAGGCGCAAAAGACCTTGCAGGCGCTATTTGGAAACAATTTATAGATCGCCCCAGGGAAGGGCCATTCGTGAATTTTCCAAGGCTTGGAGGGTTTGTGGTGAATTCCTATTTGCTGATAGATGTAGTTTTGTAAAGGAAATTGATAGCAAGGAATGGACTGGCATTCATCAATTCTTATTTGATCTTTCTGAAACACTGTTACAGGTTGGGAAGGAAAGTCAATTAGGAGCTTTAACTTCACTGGCTCATAGTTGGGTTATTCTAGATCCCTATGTTCAGGTTGTTTTCATTGACAGAAAGATCGGTACACTTAGGAAGGGAGATTTAGTTAGAGCTACCCGTAGTATTGGGGTCATTGGGAGCAGTAAGACTGATACTTTTGTGACATTAACAAATGACAATAGTATTTGTAACCTATCTGCTGACAAAAATGCATCACCACTCCATGATCATTCACCGTCTGCCAAGAGTGCATTAACTGAGGCAGCATTAAAAGATCTTGATGGTGGCAATTGTGCTTCTGATGAGCAAACCTGTGATACAAGTTTCTCCAATTACTATGGGCATTCAGAAAATGGAACAATGAAATTCTCGACAAGGGTGTCTAATTATGTCCTTGATGTAGGGAATGGTCTGAATTCCATGGGCAGTCATGGTAATGAACCTGGGAACAAGATACACAGTGAGGACTTAACTTCATTACCTTCTTATTTGTCAGGTTCCACTTGCAAACCTAAATGTCTGCCTGATGGTCCTGTTCCGTCGGGAAATTCAGATAATGTTGTCAGAGTTTCTGGCCCTACATCTACTGATGAGGATAGCGCTTTGTATTGTTCGGATGAACAGAGCTCTGAAAATCAAGTTGAAAAGCCTAATGAAATGGTGAAAAATGTACTGATGCATTGCCTTGGAGAAGAAAAAAAAGTGGACATCCCACTAGATGATAAGGCGGAAAATAATTTGGAAGAATCTCTGAATGACTTTCCAAACTATACAAGTGATGATTTATCTCATTCTTGTGCTTCAGGGGTTGTACAGAAGTCTACACAAAATGAAGGTGGGCAGCACTTTTCAGCTTCAAAGTTCAAAACAGAGATTAAAGCTTCTGCTGTACATTCTATTTTGAAGAAGAAAGGGCGTAGAAAGTGTAAAAAGATATCTGAAATTAATCCTACCTTGCCACCTCAGGTCGATATTGTTAGTGTGACTCCAGGAAAGAAAACTGAGTTGTGGGATATTGATGCGAATTGTTCTCAGTTGTATATGATAGAAGACCAGAAGTCCCAAATAGCTGATACTAAAAACATGGACAACCATGAGAAGAGCTTGTCTCTCAGTCCTATTTCACTCCATTCTGAGAGGAAAGGTTCAAAGTTCAAAAAGATTTATGCCAGTCTTAGAGGTTCGAAACCCAGAAAGAAGAAATTCAATGAATGTCAAATTGAAGATGATGACCTATTAGTTTCAGCCATAATTAGAAACAAAGATGTCAGTTCAAGTGCTGCTGGATTTTCCCCTATAAGAAAATTCTTAAAATCTAGAGCAAAAACGAACAGCAAAAGTCAAAAGAGTAGTTGTAAGCTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGGAAGTGGTATACCATTGGGGCTAGAACAGTGTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCAAATGACATGATCCAATATCAAAACCCCAAGGATGATAGTGTAGTTAAATATGGTAGAATTACTGGAGATGGCATCATCTGCAACTGCTGCAGTGAGCTACTCTCTATATCTGAATTTAAAAGTCATGCGGGTTTCAAATTTAATCGTCCTTGTTTGAATCTTTTCTTGGACTCCGGGAAGTCTTTCATGTTATGTCAGCTTCAAGCCTGGTCAACTGAGTACAAGACAAGGAGGAGTAGGACCAGAACAGTTCAAGTTGACGAAGATGATCGAAATGATGATTCATGTGGAATTTGTGGTGATGGGGGAGAACTAATATGCTGTGATAATTGCCCCTCTACATTCCATCATTCTTGTTTGTCAGTTCAGGAGCTCCCTGAAGGCAACTGGTATTGCTTAAACTGTACTTGCCGAATATGTGGCGATCTGGTGAATTATAAAGAGTCTTCAAGTTCTTCTGATGCACTAAAATGTTCTCAGTGCGAGCAAAAGTATCATGGGCAATGCCTGAAAGAAAAAAAAGACTGCAATCCTGGAGTAGAATCTCATAATTGGTTTTGTAGCGGGAGTTGCCAGAAGATTTACACAGGTCTTCAATCACGACTTGGGTTGATTAATCAGACTGCAGACGGGTTTTCATGGATTCTTCTTAGATGTATTCATAATGACCAGAAAATTTTATCTACCCCACGCTTAGCTATGATGGCAGAATGCAACTCCAGATTAGTAGTGGCTCTTACTATAATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGAACAGGAATCGATATGATACCACATCTGGTGTACAGCTGGAAGTCAAGTTTTCCTCGTCTGGACTTTCATGGATTTTACACCGTGATACTTGAGAAAGATGATGTGCTGCTATGTGTAGCATCTATCAGGGTACATGGATCAGAATTTGCTGAGATGCCCCTTATTGCAACTTGTAGTAAATATCGTCGCCAGGGAATGTGTAGGCGTCTACTGAATGCTATAGAAGAGATGCTATTGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTGGAGACATGGACTGAAGGTTTTGGCTTCATACCTGTGGAAGATGTTGAGAAACAAAGTCTTCACAGGTTCAATTTGATGGTGTTTCCTGGAACGATACTACTAAAAAAAGCCTTGTATGTAAGTGGTCAAAATACAGAGAAAACAGAAGGAATTCATTCAGGAGGACAACTTGACGCTGATTCAAAACAACAATGTGATGTTTACTCCTGTCCTGACGAAGCGTGTCCTAGAATGGAAATGAAATGTTTAAAATATCAAGAATTGCAAGAACACAATGGTGAAAAGACAACGAACAATCACGAGGAAAGTCCAGCTCCGATCGATTCATCCACGTTGCAGTTGGTTGAATCAAATAAAATGGATACTTCTTCAGAACAAAAGTCTGTTCAGTCAGTACTACAATCTGATGGAAACTGTTGCACTGACAAAGTTGGTGCCACAACTGAAACACGCACCACCCACGAGGGGAAAGAGTCGTTAGATGTAGAAGTTGGCGCAGAACGCAGCGTTCAGGTTTCGGAAGGAAAGAGCTGGGATAAAGAAGTTCATGCAGCCGCTATGACAAGATTAGTCGAACCTTTTGTTCTAACTTAG 4197 40.22 MDFQDDGFEGSANEDIIFKEVFFGNGSSHLNKRCPCKAFSYKHEPCKMNDASLCSSSELSTVSSHTYSRNIKVDECYNATENIRTSSAPNSFPFKCPSVEDNDENASAKRIKLSTDEPSDSIPDPGKVMNSSEIIREAASTNCCPAEDCDSESFTFHIVESSRQGIISSCYLLKHFVEMDSNMGEPDVPKCTSLNLEGHKPNMVNKVSASPVSQESSMTRLLVASPSDTFNEKFGSPLHLEEAGEMPELDSSLKTDLMRDPRPLLHYHVVHLLIAAGWSIERRKRPCRRYLETIYRSPQGRAIREFSKAWRVCGEFLFADRCSFVKEIDSKEWTGIHQFLFDLSETLLQVGKESQLGALTSLAHSWVILDPYVQVVFIDRKIGTLRKGDLVRATRSIGVIGSSKTDTFVTLTNDNSICNLSADKNASPLHDHSPSAKSALTEAALKDLDGGNCASDEQTCDTSFSNYYGHSENGTMKFSTRVSNYVLDVGNGLNSMGSHGNEPGNKIHSEDLTSLPSYLSGSTCKPKCLPDGPVPSGNSDNVVRVSGPTSTDEDSALYCSDEQSSENQVEKPNEMVKNVLMHCLGEEKKVDIPLDDKAENNLEESLNDFPNYTSDDLSHSCASGVVQKSTQNEGGQHFSASKFKTEIKASAVHSILKKKGRRKCKKISEINPTLPPQVDIVSVTPGKKTELWDIDANCSQLYMIEDQKSQIADTKNMDNHEKSLSLSPISLHSERKGSKFKKIYASLRGSKPRKKKFNECQIEDDDLLVSAIIRNKDVSSSAAGFSPIRKFLKSRAKTNSKSQKSSCKLLLRSLGNGEKNYKDGKWYTIGARTVLSWLLDAGVISSNDMIQYQNPKDDSVVKYGRITGDGIICNCCSELLSISEFKSHAGFKFNRPCLNLFLDSGKSFMLCQLQAWSTEYKTRRSRTRTVQVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSVQELPEGNWYCLNCTCRICGDLVNYKESSSSSDALKCSQCEQKYHGQCLKEKKDCNPGVESHNWFCSGSCQKIYTGLQSRLGLINQTADGFSWILLRCIHNDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKSSFPRLDFHGFYTVILEKDDVLLCVASIRVHGSEFAEMPLIATCSKYRRQGMCRRLLNAIEEMLLSFKVKKLVIAAIPSLVETWTEGFGFIPVEDVEKQSLHRFNLMVFPGTILLKKALYVSGQNTEKTEGIHSGGQLDADSKQQCDVYSCPDEACPRMEMKCLKYQELQEHNGEKTTNNHEESPAPIDSSTLQLVESNKMDTSSEQKSVQSVLQSDGNCCTDKVGATTETRTTHEGKESLDVEVGAERSVQVSEGKSWDKEVHAAAMTRLVEPFVLT 1398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 108220616 108247695 - Tan0005162.1 Tan01g4335 741759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4335 1398 PANTHER PHD FINGER PROTEIN 12 634 1342 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Tan01g4335 1398 Pfam PHD-finger 942 981 IPR019787 -
Tan01g4335 1398 CDD NAT_SF 1134 1194 - -
Tan01g4335 1398 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1076 1240 IPR000182 GO:0016747(InterPro)
Tan01g4335 1398 MobiDBLite consensus disorder prediction 539 570 - -
Tan01g4335 1398 Pfam Tify domain binding domain 864 914 IPR032308 -
Tan01g4335 1398 FunFam Increased DNA methylation 1 932 984 - -
Tan01g4335 1398 SUPERFAMILY FYVE/PHD zinc finger 919 983 IPR011011 -
Tan01g4335 1398 MobiDBLite consensus disorder prediction 529 570 - -
Tan01g4335 1398 CDD PHD2_CHD_II 941 981 - -
Tan01g4335 1398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 926 999 IPR013083 -
Tan01g4335 1398 ProSiteProfiles Zinc finger PHD-type profile. 939 984 IPR019787 -
Tan01g4335 1398 Gene3D - 1114 1226 - -
Tan01g4335 1398 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1129 1216 IPR016181 -
Tan01g4335 1398 SMART PHD_3 941 982 IPR001965 -
Tan01g4335 1398 SMART PHD_3 983 1038 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4335 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4335 Tan-Chr1:108220616 Tan06g0978 Tan-Chr6:8594590 3.70E-111 dispersed
Tan01g4335 Tan-Chr1:108220616 Tan01g4336 Tan-Chr1:108220616 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g4335 . 654 1242 PHD Transcription Factor Family AT3G14980 52.1 1.1e-167 588.6
Tan01g4336 . 654 1236 PHD Transcription Factor Family AT3G14980 51.4 7.2e-164 575.9
Tan08g1981 . 18 837 PHD Transcription Factor Family AT3G53680 54.3 2.9e-252 869.0
Tan04g0317 . 439 565 PHD Transcription Factor Family AT3G53680 55.1 6.3e-37 153.7
Tan05g0358 . 316 442 PHD Transcription Factor Family AT3G53680 53.9 1.4e-36 152.5
Tan05g0359 . 322 448 PHD Transcription Factor Family AT3G53680 53.9 1.4e-36 152.5
Tan05g0360 . 322 448 PHD Transcription Factor Family AT3G53680 53.9 1.4e-36 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26552 PF16135 TDBD 6.30E-17 No_clan Tan TR