Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4350 ATGGGAAAGCTTCCATTTCTGTTTTCTTTCCTGTTGTTTGCTCTGATAGTTTCTGGAAAGCAAGAACTTGAAAGAAACAGGAGAGCCATTGTAGACATGAGTTCTAGGATTGGTAAGGAAGAGATTTTAGCTATGCAGATGGCTTTAGAGGATTTCAACTTCTTCAGCAATCAAAATTTCAGTCTTGTCATTAGAGACTCCAAAAGTGATCCCAATCTGGCAGCTCTTGCAGCTAAAGATCTCATCAATGTGCAGCAAGTTGAGGTTCTAATAGGACTGCACAGTTGGGAAATGACATCCGTGGTTGCTGAGGTTGGAAATGAGAATCAGATTCCTGTTCTGGCCTTAGCTAATGAAATACCAAAGTGGGCAAATGAGAGGTTTGAATTTTTAGTCCAGGCTTCTCCTTCCATGTTAAAGCAAATGAGAGCTGTAGCTGGTATTATTGGTTCGTGGGATTGGCATTCAGTCAATTTTATATATGAAGATAGTGATTCTTCAACTTCAACCAATGGAATATTTTCTGACCTTGTGCATGCCCTCAAAGATGTAGGAGCCGAAGTAAGTGAATTTGTTGGTCTCTCACAGTTTGATTCTGATTTATTTTCCAAAGAACTGGAGAGGCTAAGAAGACGGTCGAGCAGAATTTTCGTAGTTCATATGTCTTTCGAGTTGGGATTGCGTCTATTTGAGACAGCAAAAGAGATGGGAATGATGGAAAAGGGCTATGTTTGGATCACCACTGATTCTTTCACAAGCCTTGCACATTCTTTCAATGTTTCTGTTAACTCTGTACTACAAGGGATTGTTGGAGTCAAGAGCTACTTTCCAGAAACCAATGCTTCATTTCAAGAGTTTTATCATCGGTTCTGTCGAATGTTTAGATTAGACCATTCTGATGAGGACAACTATGAGCCTGGTACTTTCGCGGTACTGGCTTACGATGCTGCAAGAGCAGCAGCTATGGCAATGAGTAAAATCCAAGAAAAGGGTCATCACTTGTTGGAAAAAATAAAGCTCACTGATTTTCAAGGACTTAGTGGAAAGATTCAGTTTAAAGACAGAAAATTAGGCCCTGCCAGTACTTTTCAGATTATCAATGTGATGGGGAGGAGTTATAGGGAACTGGGATTCTGGTCTGATAAATTAGGCTTCTCACAGGAGTTGGGGGAGAGTACGTCTTCGTCTTATAGCTTGTCGATGAAGGATCTTGGCCAAATGTTTTGGCCAGGTGGATCTTCGAACACTCCAAAGGGATGGGCTCTATCAACAGATGCCAACTCATTGAGAATTGCTGTACCAACTGGTTGCATGTTCAAAAAGTATGTAAATGTGGAGAAAGATCACACAGGAAACAATTCATCCTTCAACGGGCTTGCGATTGATCTGTTTAAAGCAACCTTAGACAACCTGCCATTCGATCTGTCGTATGACTTCTATCCTTTCGATGGAACATATGATGATTTAGTGAATGAAATCTACTTGAAGAAATACGATGCAGCAGTAGGTGACATAGCAATAATAACAAGACGCCTCGAACACGCAGACTTTACACATCCCTACTCCGAAGCAGGACTAGTGATGATAGTTCCTACCAGAAAAGACACAAGTAGTAAAGCGTGGTTGTTCACAAAGCCCTTTACTATGAGCATGTGGATTCTAATTGCTGTGGTAACAGTGTACAATGGCTTTGTTGTGTGGTTCATAGAACGAAATCACTATCCTGAACATGAAGGTTCAATGTTTAATCAAGCTGGAGCCTTACTTTGCTTATCCTTCACCACTCTCTTCTCCTTGCATGGTAATGGACTGCATAGTAACTTGTCGCGGATGGCTATGGTAGCTTGGCTATTTATGGCACTTGTGATAACTCAGACATACACAGCCAATCTTGCCAGCATGCTTACTGTGCAAAAGCTTGAAGCAACCATATCGAATATCGAGACTCTCCGAAAATTAAACACATCGGTGGGGTACGCCAGTAGATCCTTTGTGCGAAGATACGTGGACGAAGTTTTGCACTTAAATACAAAAGAGTACTCTACACCGGATGAGTTAGTTGAGGGTCTCAGAAACAAGGAGATAGCAGCTGCATTTGTTGAAGTCCCATTTGCAAAACTATTCCTTGCAAGATTTTGCAAGGAATTGATGATTTCTGGGGCAACCTACAAAGTTGGAGGATTTGGATTTGCATTTCCAAGAGGCTCTCTGCTGTTACGAGATGTTAACGAAGCATTGCTTAAGGTATCTGAAACTGGGAAGTACAGAGAGTTGGAGGACAGGATGATTGCAAGTGAGAAATGTGAGGATGGAAGTTCAAGCCTAAGCCTCAGCCCCAGCAGCTTGTTTTTACTATTTGTATTGAGTGGAGGAGTATCAACAATAGCATTCATATTGTACATTATTACTACTCATAATTCTTGTCTTCAACAGAACACTATGTGGAGATTAATGTTAGCAGTCATTAAACGCTGGAGAATTCACAGGAGGGGATTTTCTCAGCGAGTAAGCGACGTGCCACAAACCGTCCCAAATAACTTCCCAAACGCTACGAACTCGCAAATTCAGGTCTAG 2574 41.45 MGKLPFLFSFLLFALIVSGKQELERNRRAIVDMSSRIGKEEILAMQMALEDFNFFSNQNFSLVIRDSKSDPNLAALAAKDLINVQQVEVLIGLHSWEMTSVVAEVGNENQIPVLALANEIPKWANERFEFLVQASPSMLKQMRAVAGIIGSWDWHSVNFIYEDSDSSTSTNGIFSDLVHALKDVGAEVSEFVGLSQFDSDLFSKELERLRRRSSRIFVVHMSFELGLRLFETAKEMGMMEKGYVWITTDSFTSLAHSFNVSVNSVLQGIVGVKSYFPETNASFQEFYHRFCRMFRLDHSDEDNYEPGTFAVLAYDAARAAAMAMSKIQEKGHHLLEKIKLTDFQGLSGKIQFKDRKLGPASTFQIINVMGRSYRELGFWSDKLGFSQELGESTSSSYSLSMKDLGQMFWPGGSSNTPKGWALSTDANSLRIAVPTGCMFKKYVNVEKDHTGNNSSFNGLAIDLFKATLDNLPFDLSYDFYPFDGTYDDLVNEIYLKKYDAAVGDIAIITRRLEHADFTHPYSEAGLVMIVPTRKDTSSKAWLFTKPFTMSMWILIAVVTVYNGFVVWFIERNHYPEHEGSMFNQAGALLCLSFTTLFSLHGNGLHSNLSRMAMVAWLFMALVITQTYTANLASMLTVQKLEATISNIETLRKLNTSVGYASRSFVRRYVDEVLHLNTKEYSTPDELVEGLRNKEIAAAFVEVPFAKLFLARFCKELMISGATYKVGGFGFAFPRGSLLLRDVNEALLKVSETGKYRELEDRMIASEKCEDGSSSLSLSPSSLFLLFVLSGGVSTIAFILYIITTHNSCLQQNTMWRLMLAVIKRWRIHRRGFSQRVSDVPQTVPNNFPNATNSQIQV 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 108448021 108451118 + Tan0007983.1 Tan01g4350 741774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4350 857 FunFam Glutamate receptor 141 304 - -
Tan01g4350 857 Gene3D - 323 430 - -
Tan01g4350 857 Gene3D - 431 540 - -
Tan01g4350 857 FunFam Glutamate receptor 540 678 - -
Tan01g4350 857 CDD GluR_Plant 429 763 - -
Tan01g4350 857 Gene3D - 146 285 - -
Tan01g4350 857 Pfam Bacterial extracellular solute-binding proteins, family 3 452 548 IPR001638 -
Tan01g4350 857 SUPERFAMILY Periplasmic binding protein-like I 35 420 IPR028082 -
Tan01g4350 857 FunFam Glutamate receptor 424 539 - -
Tan01g4350 857 Pfam Receptor family ligand binding region 43 368 IPR001828 -
Tan01g4350 857 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 809 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Tan01g4350 857 CDD PBP1_GABAb_receptor_plant 29 389 IPR044440 -
Tan01g4350 857 Gene3D - 29 145 - -
Tan01g4350 857 SMART GluR_14 430 765 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan01g4350 857 PIRSF IGluLR_plant 2 841 IPR017103 -
Tan01g4350 857 Gene3D - 541 679 - -
Tan01g4350 857 Pfam Ligand-gated ion channel 762 788 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan01g4350 857 SUPERFAMILY Periplasmic binding protein-like II 407 761 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4350 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4350 Tan-Chr1:108448021 Tan02g1824 Tan-Chr2:83962259 3.50E-120 dispersed
Tan01g4349 Tan-Chr1:108431673 Tan01g4350 Tan-Chr1:108448021 0.00E+00 tandem
Tan01g4350 Tan-Chr1:108448021 Tan01g4351 Tan-Chr1:108457406 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68