Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4370 ATGGCTGCCGGAGACCGGTCCTCATCCACCGCCGCCGCCGCCACCGCCACTTCCGCCGTCGAGATCCGGTACAGGGGCGTCAGGAAGAGGCCATGGGGCCGTTACGCGGCCGAAATCCGGGACCCTCGGAAGAAGACTAGGGTTTGGCTCGGCACCTTCAACACGGCCGAGGAAGCGGCGCGTGCTTACGACACCGCCGCGCGTGAATTCAGAGGCGCCAATGCCAAAACCAACTTCCCCGTTCCGAACGAATTCCTCCTCGTTGACAACAACTTACATAAATCCGGTTGCAGTAGTCCCAGCGAGACTAGCACCGTCGACTCCTCTTCCGCCCCGTCGCCGTCGCTTCCCTCGGATGCTGCACTCGCTCGCTTCCTCGACGGCACCGTCCACGCGCCGGCTATTTCCCGCCCAATTTACTTCTTCGACGCGTTCTCCCAGGCGGAGAAGATGAGTGGCTTCGATCGGACCGTCGCCGGCGGAGGTGGATCCGCAAGCGAGTCCGATTCGGCCTCCGTCGTTGATTTCGAGGATTCGCGAGAATCGCGGGTGTTGGATTTTGACCTGAATCTTCCAGCGGTGGAAGTTGCTTAG 594 61.78 MAAGDRSSSTAAAATATSAVEIRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFNTAEEAARAYDTAAREFRGANAKTNFPVPNEFLLVDNNLHKSGCSSPSETSTVDSSSAPSPSLPSDAALARFLDGTVHAPAISRPIYFFDAFSQAEKMSGFDRTVAGGGGSASESDSASVVDFEDSRESRVLDFDLNLPAVEVA 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 108651895 108653480 + Tan0011950.1 Tan01g4370 741794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4370 197 CDD AP2 23 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4370 197 SMART rav1_2 23 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4370 197 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4370 197 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Tan01g4370 197 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4370 197 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4370 197 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 157 - -
Tan01g4370 197 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4370 197 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677(InterPro)
Tan01g4370 197 Pfam AP2 domain 23 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4370 K09286 - - csv:101213540 218.779
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4370 Tan-Chr1:108651895 Tan05g2456 Tan-Chr5:75694124 5.10E-30 dispersed
Tan01g4370 Tan-Chr1:108651895 Tan02g0197 Tan-Chr2:1685910 3.40E-34 wgd
Tan01g4370 Tan-Chr1:108651895 Tan03g2500 Tan-Chr3:78408857 1.80E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g184 . . . Bda09g00524 . Bpe02g01898 . . . . Cma01g01222 Cma09g00846 Car01g01044 Car09g00759 Sed04g2417 . . Bhi09g03458 Tan01g4370 Cmetu07g1192 . Hepe01g1405 Mch11g1046 . Cla11g01739 Cam11g1809 Cec11g1829 Cco11g1835 Clacu11g1969 Cmu11g1779 Cre11g2185 Cone6ag0166 Cone9ag0191 . . Lsi04g02049 Csa04g02321 Chy07g00055 Cme07g00574 . . . . . Bpe01g00438 . . . Cmo01g01275 Cmo09g00840 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006814 3 1 2 1 2 0 2 1 0 1 1 1 2 1 1 2 0 2 0 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26558 PF00847 AP2 4.00E-14 CL0081 Tan TF