Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4374 ATGGCGGCCATGGCCGGAAAATACGTCAAGAACTTTTCCTACTTTATCACCTCAGGCATTCGCATTCCCATATTTCCTTTCTCTCGTCTTCTCCCTTCCCCTTTCTCTTCCACCATCCATAAAAAACGACAGCTCCTGATTTCCACTTCACTTATTTCACAATTCTCTTCTTCTTCCTCTCCTTCTCCTTCATTTCTTACCGATTACACCTCTGCCCAGTATCTATCCGTCCGCATCCGGTGCCCAAAGGATATCGTGGATTTGCTTTCAGAAGCTCTACTAAGTTTTGGTGCGAGCTCTACTAGTGTGGATGAAGACGATGTTTGTGGCAACTCTCACGAGATATATGTTGACACAATATTCCCTGATGGTCAAGATGTAAGTAAATGCATCTCATATGCGGCTGATTCTGTAGGCTTGAAGGAGATACCGATGTACGAAGTTACAATTGGTGATCAACATGATTGGTTAAAGAAATCCCAGGAATCGTTTCATCCAGTTAAGGTTACTGAGGGACTTTGGATAGTGCCTGAGTGGATAACTCCCCCGGATATCCATGCGACAAATATTATTCTATATCCTGGATTGGCATTTGGAACAGGGGAACACCCAACAACAAAGTTATGTTTACTACTTCTGCACAGCTTAGTGAAAGGAGGGGAATATTTCTTGGACTATGGCACAGGATCTGGCATTCTTGCAATTGCATCACTGAAGTTTGGAGCTGCCTTATCTATTGGAATCGATGTAGACCCGAAAGCAATTGAATCTGCAGAGCAAAATGCTGCTCTGAACAATATAGAACCTGAAAGATTGCAACTTCACCTGGTTCCTAGTGATATAGCAGAATATAAACTTAGTGAAACATGTATCTCTGGAAAGGAGAACTTCGACGTCGTCATTGCAAATATACTTCTAAATCCTCTGCTAGATTTGGCAGATCAGGTTGTCTCTTACGCCAAACCTGAGGCAGTCGTTGCTCTCTCTGGTATTCTATCCGAGCAGGTTCCAGCTATTATAGAACGGTATTCACTGTACCTAGAAGGCATATCGGTGTCAACTATGGATGATTGGGCCTGTGTGAGTGGCAGAAAGAAAAGGCTGCTTTCTGGCAGCTGA 1119 43.43 MAAMAGKYVKNFSYFITSGIRIPIFPFSRLLPSPFSSTIHKKRQLLISTSLISQFSSSSSPSPSFLTDYTSAQYLSVRIRCPKDIVDLLSEALLSFGASSTSVDEDDVCGNSHEIYVDTIFPDGQDVSKCISYAADSVGLKEIPMYEVTIGDQHDWLKKSQESFHPVKVTEGLWIVPEWITPPDIHATNIILYPGLAFGTGEHPTTKLCLLLLHSLVKGGEYFLDYGTGSGILAIASLKFGAALSIGIDVDPKAIESAEQNAALNNIEPERLQLHLVPSDIAEYKLSETCISGKENFDVVIANILLNPLLDLADQVVSYAKPEAVVALSGILSEQVPAIIERYSLYLEGISVSTMDDWACVSGRKKRLLSGS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 108673827 108683625 - Tan0012660.1 Tan01g4374 741798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4374 372 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE 74 366 IPR050078 GO:0005739(PANTHER)|GO:0008276(PANTHER)
Tan01g4374 372 Gene3D Vaccinia Virus protein VP39 163 369 IPR029063 -
Tan01g4374 372 Hamap Ribosomal protein L11 methyltransferase [prmA]. 72 365 IPR004498 GO:0006479(InterPro)|GO:0008276(InterPro)
Tan01g4374 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 361 IPR029063 -
Tan01g4374 372 Pfam Ribosomal protein L11 methyltransferase (PrmA) 74 366 - -
Tan01g4374 372 CDD AdoMet_MTases 223 329 - -
Tan01g4374 372 NCBIfam 50S ribosomal protein L11 methyltransferase 78 358 IPR004498 GO:0006479(InterPro)|GO:0008276(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4374 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4374 Tan-Chr1:108673827 Tan01g4375 Tan-Chr1:108673827 9.40E-211 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g187 . . . . . . . . . . . Cma09g00849 . Car09g00762 . . . Bhi09g03453 Tan01g4374 . . Hepe01g1402 . . Cla11g01744 Cam11g1812 Cec11g1832 Cco11g1838 Clacu11g1972 Cmu11g1782 Cre11g2189 Cone6ag0163 . . . Lsi04g02053 Csa04g02325 Chy07g00057 Cme07g00578 . . . . . . . . . . Cmo09g00842 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010338 1 2 1 0 0 0 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 2 1 1 1 2 2 1 28