Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4378 ATGGTGGGCTCAGGAGCATCAGACAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGCGTCTGTCTCAATTCAGACTGGACTTACTCTGTCTTCTGGACCATCCGCCCTCGTCCAAGGGTCAGAGGAGGCAATGGATGCAAAGTTGGGGATGATAATGGCAGCTTGATGTTAATGTGGGAAGATGGGTTTTGCCGAGGGAGAGTTTCAGAGTGCTTGGAGGAGATTGATGGGGATGATCCTGTTAGAAAAGCCTTCAGCAAGATGTCCATTCAGTTATATAATTATGGAGAAGGGCTGATGGGGAAAGTTGCATCAGATAAGTGCCATAAATGGGTTTTCAAAGAACCTACAGAATGCGAGCCAAACATTTCAAACTACTGGCAAAGTTCATTTGATGCTCTTCCTCCTGAATGGACTGATCAGTTTGATTCTGGAATTCAGACTATTGCTGTTATTCAAGCTGGACATGGCCTCCTTCAGCTTGGTTCCTGCAAGATTATACCAGAAGATCTGCATTTTGTGCTGAGAATGAGGCATACTTTTGAATCTCTTGGGTACCAATCTGGTTTTTATTTGACTCAACTCTTTTCTTCAAATAGAAACTCATCTTCTTCCCCAATGGCTTCAAAGCAATCTGCCATTCCCCTTCACCCTCCTCCTAATCTCCTCAATTGGGCACAAAGGCCAATTCCATCTGCTCCAACTTCTCTGCTTCCTTCCCCCAATTTCCACACCTCAAATAGGCTCGGTTTCCCACAGTCGAAAGACGAGACGCATATGTTTCTGTTGCCACATTCATCCGAGGCTCGGATGGAGGACGTGATGGGAGATCATGACAATGATATCAAATGGCCTAATGGGTTGTCTTTGTTCAATGCCCTCACAGGACGAGCCGATGACGCCAAACTTTTGTTCAACCCAGAGAGCTTAGGAACCAAACCTGATCAAACGCACCTCCCTTTGATCCTCGAACCAAAGAACGCAAATCTTAACTCCGATCCCATGCACAACACGAATGGAGGTAACCCGAATGAGTTCTTGAGCCTAGACAGCCAATCTGAGAGTGCTAGGAAGATGGAAAACAAGTTCAAGAGAAGCTTTACTTTGCCTGCAAGAATGACTTCATCGTCATCTTCAACTTCACTCGACCACCATCCGCATCAATCAGTCGAGTATCGGAGCTCGGAGCAGGCGGGTATGTACCCGGACGTAATGGAGACATACTTGGAATGA 1251 46.52 MVGSGASDRSKEAVGMMALHEALRSVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRVSECLEEIDGDDPVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFDSGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLTQLFSSNRNSSSSPMASKQSAIPLHPPPNLLNWAQRPIPSAPTSLLPSPNFHTSNRLGFPQSKDETHMFLLPHSSEARMEDVMGDHDNDIKWPNGLSLFNALTGRADDAKLLFNPESLGTKPDQTHLPLILEPKNANLNSDPMHNTNGGNPNEFLSLDSQSESARKMENKFKRSFTLPARMTSSSSSTSLDHHPHQSVEYRSSEQAGMYPDVMETYLE 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 108743893 108745869 + Tan0009670.1 Tan01g4378 741802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4378 416 MobiDBLite consensus disorder prediction 374 391 - -
Tan01g4378 416 PANTHER GB|AAF34833.1 1 416 IPR044170 -
Tan01g4378 416 MobiDBLite consensus disorder prediction 373 416 - -
Tan01g4378 416 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 19 75 IPR025610 -
Tan01g4378 416 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 88 187 IPR025610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4378 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4378 Tan-Chr1:108743893 Tan04g1205 Tan-Chr4:11195654 5.90E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g190 . . . Bda09g00523 Bpe09g00241 . . Bma13g00941 . . Cma01g01214 Cma09g00852 Car01g01038 Car09g00766 Sed04g2409 Cpe06g00679 Cpe02g00696 Bhi09g03447 Tan01g4378 Cmetu07g1164 . Hepe01g1399 Mch11g1052 . Cla11g01747 Cam11g1815 Cec11g1835 Cco11g1841 Clacu11g1975 Cmu11g1785 Cre11g2192 . . Cone14ag1057 Cone15ag1049 Lsi04g02057 Csa04g02328 Chy07g00060 Cme07g00581 . Blo10g00751 . Bda12g00834 . . . . . Cmo01g01270 Cmo09g00845 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004966 2 1 2 3 2 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 2 1 1 1 1 1 1 38