Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4380 ATGACTGGGAAAGAGATTCTCCACAAGATGAAGGAAAAAGTTGGGCTGGGTTCGTCAGATCCAGACTCTGGAAAAGGAAAGAGCAAGATGTCCAAGCATGTCACACATGGTTTTCACTTGGTGGAAGGAAAATCAAATCATGCCATGGAAGATTATGTGGTTGCAGATTTTAAGCAAGTTGATCATCATGAGCTTGGTTTATTTGCAATCTTCGATGGCCATTTGAGCAATGCTATCCCTGATTATTTACAGTCGCATTTATTTTCTAATATAATAAATGAGCCTGATTTCTGGACCGATCCAAAGAATGCAATCAGGAAAGCATACAGGGAAACTGATGTTTACATTTTGGAGAAGGCTGTTGATTTTAGTCATGGGGGTTCAACTGCTGTTACAGCCATATTGATAGACTGTAAGAAACTAGTAGTTGGGAATGTGGGGGACTCCCGTGCAGTTATCTGCAGGAACGGTAAGGCCAGCCAATTATCAGTCGATCATGAGCCAAGCGTTGAAAGAAAAAGCATTGAGGGCAGAGGTGGTTTTGTAACAAGCTTTCCTGGGGACGTTCCACGCGTTGACGGGCAGTTGGCGGTCGCAAGGGCATTTGGTGATAGGAGCTTAAAGATGCACTTGAGCTCAGAGCCTGATGTGGTAGAGGAGATGATAGATGGTGAGACCGAGTTTGTTATCTTGGCAAGTGATGGATTGTGGAAGGTGATGTCGAACGAAGAAGCCGTAGAGTCTATCAGGCATATAAAAGACGCTCATGCAGCTGCCAAGCACTTGACTGAGGAGGCCCTCAAGAGGAAAAGCAAAGATGATATTTCTTGTATAGTTGTGAGATTTCACTGA 852 44.01 MTGKEILHKMKEKVGLGSSDPDSGKGKSKMSKHVTHGFHLVEGKSNHAMEDYVVADFKQVDHHELGLFAIFDGHLSNAIPDYLQSHLFSNIINEPDFWTDPKNAIRKAYRETDVYILEKAVDFSHGGSTAVTAILIDCKKLVVGNVGDSRAVICRNGKASQLSVDHEPSVERKSIEGRGGFVTSFPGDVPRVDGQLAVARAFGDRSLKMHLSSEPDVVEEMIDGETEFVILASDGLWKVMSNEEAVESIRHIKDAHAAAKHLTEEALKRKSKDDISCIVVRFH 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 108802212 108805459 + Tan0006621.1 Tan01g4380 741804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4380 283 SMART PP2C_4 31 280 IPR001932 -
Tan01g4380 283 Pfam Protein phosphatase 2C 48 275 IPR001932 -
Tan01g4380 283 SUPERFAMILY PP2C-like 31 283 IPR036457 -
Tan01g4380 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Tan01g4380 283 PANTHER PROTEIN PHOSPHATASE 31 280 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan01g4380 283 CDD PP2Cc 43 282 IPR001932 -
Tan01g4380 283 FunFam Probable protein phosphatase 2C 39 25 283 - -
Tan01g4380 283 Gene3D - 30 283 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4380 Tan-Chr1:108802212 Tan02g0201 Tan-Chr2:1718196 1.40E-97 dispersed
Tan11g1206 Tan-Chr11:9994268 Tan01g4380 Tan-Chr1:108802212 6.20E-48 transposed
Tan01g4380 Tan-Chr1:108802212 Tan02g0200 Tan-Chr2:1718196 8.10E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4380 K17506 - csv:101215129 510.76