Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4385 ATGGCGTCCCTCAGATCTCTCTCCCTCTCTCTCTGCATTCTCTTCCCCTGTTTTTTCACTCTCTCTCAAGCCTACACCTTCTACGTCGGTGGCAAAGACGGGTGGGTTCTTAACCCATCTGAGAGTTACAGTAATTGGGCTCGCAGAAACAGGTTCCAAGTCAATGACGTTCTGGTGTTTAAGTATGCGAAAGGGTCGGATTCTGTGTTGGTGGTGAGTAAAGAGGATTATGACAAGTGTTATTTGAAGAATCCGATTATGAAATTAGATGATGGGAATTCTGAATTCAAGTTTGATCGGCCTGGGGCGTTTTATTTTGTTAGTGGCAACCATGGGAGCTGCCAAAATGGCCAGAAATTGCTTCTTGTTGTTATGGCTGTCCGGCCTCTTCCTCCGCCGTCTACGGTGGGTTCTCCGCCTCCTGGACCTAAGTCGCCCGTTTCGGCTCCGGTGCCGGGGGTTTCTCCCAGTCCGCCGTCTGGGACACCTTCCTCGCCCGCGCCTCATGGGGCTAAATCTCCGGTGACTGCACCTACGCCGCCATCTGGTTCTCCTGGAGCTAAATCGCCTTCTGGCTCTCCGCCGTCGGGAACTCCCAGTTCGCCGGCTCCTTCTGGGTCGCAAACTCCGGTAACTGCTCCGGGGCCGTCAGGTTCTCATTCCTCTGGTTCGCCGTATCCTGGAGCAAATTCTCCTTCTGGTTCCCCGCCGTCGGGAACACCCAGTTCGCCGTCTCCGTCGTCGGGAACACCCATTTTGCCATCTCCGCCGTCGGGCACACCCAGCTCGCCGTCTCCTGGGTCTCATGCTCCGGTGCCGTCAGGTTCTCAGTCTCCTGGTTCGCCATATCCCGGAGCTGAATCTCCTTCTGGTTCTACGCCGGTGGGGACACCGCCCACTTCACCTTCTCCATCATCGGGAACACCCACTTCGCCGTCTCCGTCTGGGTCTGAAACTCCAGTGACGACGCCATCTCCGGCTGGTTCTCCTTCATCAAATCCAGGAGCGAAATCTCCGTCAGTATCTCCGCCATTGGGGACACCCACGTCACCATCTCCGGCTGGTTCTCCTGTGACCATACCAACGCCGGCCGGTTCTCCCACTTCACCTTACCCCGGAGCTCACTCTCCGTCAGAGTCACACATTTCGCCGTCTCCTTCTGGTTCCGAAACTCCGGCGACCACACCAGTCCCCACTGGCTCTCCCACTTCACCATTCCCCGGAACAATCTCCCCGTCGGGATCACCCTCTTCGCCGCTCCCCGGTGGCGCCGCCTCCCCCGGAACATCTCCTGCCGGCTCCCCATCTTCCGGAACTAATTCCCCGACTACTTCGCCATCTCCCGCCGGCGCCATCACTCCCACAACAGCTCCGGTGCCGGCATTTTCACCGAGCACATCATCTCCGATTATCTCTCCCATCTTATCACCATCGACCGGATCACCAGTTGGCTCGCCAGGACCGTCGCTACTCCCACCGGAATCCGGTGCTCCGGTAAGTTCACCGCCGTCTCCACCATTATCGTCATCGTCTTCCCCAGGACCAGCACCGTCACCAACCGGTGCTGCAAATGACAGAACACGGTCAGGAACAGTGCCGTCGTCGGCCATAGCTTCAACTCCGTCAGTAATATTGTTGGGTTCCATCACAGTTCTGCTAAGCATGGTCATTAATGGCGGAGTTATTATTAACTTCACATAA 1701 56.85 MASLRSLSLSLCILFPCFFTLSQAYTFYVGGKDGWVLNPSESYSNWARRNRFQVNDVLVFKYAKGSDSVLVVSKEDYDKCYLKNPIMKLDDGNSEFKFDRPGAFYFVSGNHGSCQNGQKLLLVVMAVRPLPPPSTVGSPPPGPKSPVSAPVPGVSPSPPSGTPSSPAPHGAKSPVTAPTPPSGSPGAKSPSGSPPSGTPSSPAPSGSQTPVTAPGPSGSHSSGSPYPGANSPSGSPPSGTPSSPSPSSGTPILPSPPSGTPSSPSPGSHAPVPSGSQSPGSPYPGAESPSGSTPVGTPPTSPSPSSGTPTSPSPSGSETPVTTPSPAGSPSSNPGAKSPSVSPPLGTPTSPSPAGSPVTIPTPAGSPTSPYPGAHSPSESHISPSPSGSETPATTPVPTGSPTSPFPGTISPSGSPSSPLPGGAASPGTSPAGSPSSGTNSPTTSPSPAGAITPTTAPVPAFSPSTSSPIISPILSPSTGSPVGSPGPSLLPPESGAPVSSPPSPPLSSSSSPGPAPSPTGAANDRTRSGTVPSSAIASTPSVILLGSITVLLSMVINGGVIINFT 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 108906991 108909270 + Tan0013979.1 Tan01g4385 741809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4385 566 PANTHER BLUE COPPER PROTEIN 19 168 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Tan01g4385 566 FunFam Early nodulin-like protein 1 24 129 - -
Tan01g4385 566 CDD OsENODL1_like 25 125 IPR041846 -
Tan01g4385 566 MobiDBLite consensus disorder prediction 514 535 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 406 485 - -
Tan01g4385 566 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055(InterPro)
Tan01g4385 566 MobiDBLite consensus disorder prediction 202 229 - -
Tan01g4385 566 Pfam Plastocyanin-like domain 35 118 IPR003245 GO:0009055(InterPro)
Tan01g4385 566 MobiDBLite consensus disorder prediction 344 370 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 295 309 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 310 343 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 133 535 - -
Tan01g4385 566 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
Tan01g4385 566 Gene3D - 23 128 IPR008972 -
Tan01g4385 566 MobiDBLite consensus disorder prediction 371 397 - -
Tan01g4385 566 PRINTS Proline rich extensin signature 147 168 - -
Tan01g4385 566 PRINTS Proline rich extensin signature 216 241 - -
Tan01g4385 566 PRINTS Proline rich extensin signature 174 190 - -
Tan01g4385 566 PRINTS Proline rich extensin signature 191 208 - -
Tan01g4385 566 PRINTS Proline rich extensin signature 129 141 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 486 513 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 230 268 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 269 294 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 133 165 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 173 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4385 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4385 Tan-Chr1:108906991 Tan05g0755 Tan-Chr5:5477121 1.40E-37 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g4518 . 11 132 Phytocyanin Superfamily AT3G20570 57.7 5.8e-37 151.8
Tan01g4385 . 2 159 Phytocyanin Superfamily AT5G53870 50.6 6.0e-37 152.5
Tan05g2299 . 22 156 Phytocyanin Superfamily AT1G48940 54.8 2.7e-38 156.0
Tan02g1428 . 17 129 Phytocyanin Superfamily AT3G01070 64.0 4.8e-37 151.8
Tan02g1428 . 17 180 Phytocyanin Superfamily AT5G15350 52.7 1.2e-46 183.7
Tan05g2299 . 20 132 Phytocyanin Superfamily AT3G18590 65.2 1.1e-37 154.1
Tan01g4385 . 2 159 Phytocyanin Superfamily AT5G53870 50.6 6.0e-37 152.5
Tan05g2299 . 20 132 Phytocyanin Superfamily AT3G18590 65.2 1.1e-37 154.1
Tan05g2299 . 22 156 Phytocyanin Superfamily AT1G48940 54.8 2.7e-38 156.0
Tan01g4518 . 11 132 Phytocyanin Superfamily AT3G20570 57.7 5.8e-37 151.8
Tan02g1428 . 17 129 Phytocyanin Superfamily AT3G01070 64.0 4.8e-37 151.8
Tan02g1428 . 17 180 Phytocyanin Superfamily AT5G15350 52.7 1.2e-46 183.7
Tan07g0828 . 19 220 Phytocyanin Superfamily AT1G08500 54.4 2.6e-54 209.5
Tan09g0929 . 30 134 Phytocyanin Superfamily AT2G27035 59.0 1.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002701 2 2 1 2 4 1 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 1 2 1 54