Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4385 ATGGCGTCCCTCAGATCTCTCTCCCTCTCTCTCTGCATTCTCTTCCCCTGTTTTTTCACTCTCTCTCAAGCCTACACCTTCTACGTCGGTGGCAAAGACGGGTGGGTTCTTAACCCATCTGAGAGTTACAGTAATTGGGCTCGCAGAAACAGGTTCCAAGTCAATGACGTTCTGGTGTTTAAGTATGCGAAAGGGTCGGATTCTGTGTTGGTGGTGAGTAAAGAGGATTATGACAAGTGTTATTTGAAGAATCCGATTATGAAATTAGATGATGGGAATTCTGAATTCAAGTTTGATCGGCCTGGGGCGTTTTATTTTGTTAGTGGCAACCATGGGAGCTGCCAAAATGGCCAGAAATTGCTTCTTGTTGTTATGGCTGTCCGGCCTCTTCCTCCGCCGTCTACGGTGGGTTCTCCGCCTCCTGGACCTAAGTCGCCCGTTTCGGCTCCGGTGCCGGGGGTTTCTCCCAGTCCGCCGTCTGGGACACCTTCCTCGCCCGCGCCTCATGGGGCTAAATCTCCGGTGACTGCACCTACGCCGCCATCTGGTTCTCCTGGAGCTAAATCGCCTTCTGGCTCTCCGCCGTCGGGAACTCCCAGTTCGCCGGCTCCTTCTGGGTCGCAAACTCCGGTAACTGCTCCGGGGCCGTCAGGTTCTCATTCCTCTGGTTCGCCGTATCCTGGAGCAAATTCTCCTTCTGGTTCCCCGCCGTCGGGAACACCCAGTTCGCCGTCTCCGTCGTCGGGAACACCCATTTTGCCATCTCCGCCGTCGGGCACACCCAGCTCGCCGTCTCCTGGGTCTCATGCTCCGGTGCCGTCAGGTTCTCAGTCTCCTGGTTCGCCATATCCCGGAGCTGAATCTCCTTCTGGTTCTACGCCGGTGGGGACACCGCCCACTTCACCTTCTCCATCATCGGGAACACCCACTTCGCCGTCTCCGTCTGGGTCTGAAACTCCAGTGACGACGCCATCTCCGGCTGGTTCTCCTTCATCAAATCCAGGAGCGAAATCTCCGTCAGTATCTCCGCCATTGGGGACACCCACGTCACCATCTCCGGCTGGTTCTCCTGTGACCATACCAACGCCGGCCGGTTCTCCCACTTCACCTTACCCCGGAGCTCACTCTCCGTCAGAGTCACACATTTCGCCGTCTCCTTCTGGTTCCGAAACTCCGGCGACCACACCAGTCCCCACTGGCTCTCCCACTTCACCATTCCCCGGAACAATCTCCCCGTCGGGATCACCCTCTTCGCCGCTCCCCGGTGGCGCCGCCTCCCCCGGAACATCTCCTGCCGGCTCCCCATCTTCCGGAACTAATTCCCCGACTACTTCGCCATCTCCCGCCGGCGCCATCACTCCCACAACAGCTCCGGTGCCGGCATTTTCACCGAGCACATCATCTCCGATTATCTCTCCCATCTTATCACCATCGACCGGATCACCAGTTGGCTCGCCAGGACCGTCGCTACTCCCACCGGAATCCGGTGCTCCGGTAAGTTCACCGCCGTCTCCACCATTATCGTCATCGTCTTCCCCAGGACCAGCACCGTCACCAACCGGTGCTGCAAATGACAGAACACGGTCAGGAACAGTGCCGTCGTCGGCCATAGCTTCAACTCCGTCAGTAATATTGTTGGGTTCCATCACAGTTCTGCTAAGCATGGTCATTAATGGCGGAGTTATTATTAACTTCACATAA 1701 56.85 MASLRSLSLSLCILFPCFFTLSQAYTFYVGGKDGWVLNPSESYSNWARRNRFQVNDVLVFKYAKGSDSVLVVSKEDYDKCYLKNPIMKLDDGNSEFKFDRPGAFYFVSGNHGSCQNGQKLLLVVMAVRPLPPPSTVGSPPPGPKSPVSAPVPGVSPSPPSGTPSSPAPHGAKSPVTAPTPPSGSPGAKSPSGSPPSGTPSSPAPSGSQTPVTAPGPSGSHSSGSPYPGANSPSGSPPSGTPSSPSPSSGTPILPSPPSGTPSSPSPGSHAPVPSGSQSPGSPYPGAESPSGSTPVGTPPTSPSPSSGTPTSPSPSGSETPVTTPSPAGSPSSNPGAKSPSVSPPLGTPTSPSPAGSPVTIPTPAGSPTSPYPGAHSPSESHISPSPSGSETPATTPVPTGSPTSPFPGTISPSGSPSSPLPGGAASPGTSPAGSPSSGTNSPTTSPSPAGAITPTTAPVPAFSPSTSSPIISPILSPSTGSPVGSPGPSLLPPESGAPVSSPPSPPLSSSSSPGPAPSPTGAANDRTRSGTVPSSAIASTPSVILLGSITVLLSMVINGGVIINFT 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 108906991 108909270 + Tan0013979.1 Tan01g4385 741809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4385 566 PANTHER BLUE COPPER PROTEIN 19 168 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Tan01g4385 566 FunFam Early nodulin-like protein 1 24 129 - -
Tan01g4385 566 CDD OsENODL1_like 25 125 IPR041846 -
Tan01g4385 566 MobiDBLite consensus disorder prediction 514 535 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 406 485 - -
Tan01g4385 566 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055(InterPro)
Tan01g4385 566 MobiDBLite consensus disorder prediction 202 229 - -
Tan01g4385 566 Pfam Plastocyanin-like domain 35 118 IPR003245 GO:0009055(InterPro)
Tan01g4385 566 MobiDBLite consensus disorder prediction 344 370 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 295 309 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 310 343 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 133 535 - -
Tan01g4385 566 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
Tan01g4385 566 Gene3D - 23 128 IPR008972 -
Tan01g4385 566 MobiDBLite consensus disorder prediction 371 397 - -
Tan01g4385 566 PRINTS Proline rich extensin signature 147 168 - -
Tan01g4385 566 PRINTS Proline rich extensin signature 216 241 - -
Tan01g4385 566 PRINTS Proline rich extensin signature 174 190 - -
Tan01g4385 566 PRINTS Proline rich extensin signature 191 208 - -
Tan01g4385 566 PRINTS Proline rich extensin signature 129 141 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 486 513 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 230 268 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 269 294 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 133 165 - -
Tan01g4385 566 MobiDBLite consensus disorder prediction 173 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4385 Tan-Chr1:108906991 Tan05g0755 Tan-Chr5:5477121 1.40E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4385 - - - 0.0