Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4390 ATGGCTTCTTCCAATTCTTTCTTCACTACGCCGACCAAAACCCCCTCTGAAAAGTCCTCCAGAAAGGTTCACAACTCCAGCCGGATGGACGCGTCCGAGTCCAGATCCCGATTCGAAGCCTACAATCGTCTTCAGGCGGCGGCTGTGGCCTTCGGCGAGAAGCTTCCGATTCCCGAGATCGTCGCCTTGGGTGGTCAATCCGACGGCAAGAGCTCTCTCTTAGAAGCCCTCCTTGGATTCCGCTTCAATGTCCGCGAAGTCGAAATGGGCACCCGCAGGCCTTTGATCCTCCAAATGGTCCACGATCCGACTGCTCTCGATCCCCGCTGCCGATTTCAGGAGGAAGATTCTGAAGAATATGGAAATCCTGTTGTTTTAGCATCTGCAATTGCAGACATTATCAAGTCTCGAACTGAGGCGCTGTTGAAGAAGACCAAAAGTGCAGTTTCTTCCAAGCCTATTGTGATGAGAGCAGAATATGCACATTGCCCCAACCTCACCATTATTGATACCCCTGGCTTTGTTCTTAAGGCAAGGAAGGGAGAGCCAGAGAACACACCAGAAGAAATTCTTTCAATGGTGAAGTCCCTTGCAAGTCCCCCCCATCGTATCCTCTTGTTCCTTCAACAAAGTAGTGTTGAGTGGTGTTCATCATTGTGGTTGGATTCGATTCGTGAAATTGATCCAGCATTTAGACGGACAATTGTTGTTGTCTCCAAATTTGATAATCGTCTCAAGGAATTCAGTGATCGATGGGAAGTGGATAAATATTTGAGTGCCAGTGGTTACCTTGGAGATAACACTCACCCATTTTTTGTGGCCCTGCCAAAGGACAGAAATACTGTTTCTAATGATGAATTTCGCCGACAAATATCTCAAGTGGATTCTGAGGTCCTTCGTCATCTACGTGATGGTGTCAAGGGAGGGTTCGATGAAGAGAAATATAGGTCCTACATTGGTTTTGGCTGCCTGAGGGAATATTTAGAATCTGAGCTTCAGAAGAGATACAAGGAAGCTGCTCCAGCAACTTTGGCTTTGCTAGAGCAACGTTGTGGTGAAGTTGCATCTGAACTATGTAGAATGGAGTCAAAAATACAAGCTACTTCAGATATTGCACATCTTAGGAGATATGCTATGCTGTATACAGCTTCTATCAGCAATCATGTGAGCGCATTGATTGAAGGAGCAGCAGATCCTGCCCCAGAGCAATGGGGGAAAACTACTTTGGAGGAACAGTCAGGAAGTGGCATTGGAAGTTGGCCAGGTGTTACATCAGAGGTCAAACCTGCCAACTCTAGCCTTCGGTTGTATGGTGGTGCTGCCTTTGAAAGAGTAATGTTTGAGTTTCGGTGTGCTGCTTATTCAATTGAGTGTCCTTCAGTTTCAAGGGAGAAGGTAGCAAACATACTACTTGCTCATACCGGCAAACGTGGAGGTAGGGGATTAACAGAAGCAGCTGCAGAGATTGCCCGTGCTGCTGCACGATCATGGCTTGCTCCTCTTCTAGATACTGCTTGTGATCGTCTTGCTTTTGTATTGGAAAATCTTTTTGATCTTGCTCTGGAAAGAAATCGGGCCTATGAATCACAAAATGGGAAGAAACATTGTAGCATGGACGGCTATGTTGGTTTTCACGCTGCTTTAAGGCATGCTTACAATCGTTTTCTGAAGGATCTTGCTAAACAGTGCAAGCAACTACTTCGTCACCACCTCGATTCTGTTACAAGCCCATATTCACTTGTCTGCTACGAGAATGACTTTGAAGGAGGCTCTCTCTCAAATGCATCTTCTTTTCAGAAAATCAATCGGGTTTCTGCAGGTTTGTTCTCGTTTGAATTATCTGATTGTGGGACAGTATCTCATGACGAAACAATGAAGGATCAGGAGAACATACCTCCAGAAAAGAACATACAGCAGATAACACCAGGAAAAGGTACCGAATCTAGAGAAGCCCTTCGAGAATGCCAAATGACTATTCCCGAGACTCCTTCACCAGAGCAACCTTGTGATGTTGGGTATGGAGTAAAGAAGGAATTTGTGAATGGGATGGATATTGGAGTTCGAAAAAGGGCTTCAAGAGTGACCAGAAATTCTAGCCGGATGGGCGGTCAAGATGGTGGGGGAACTTTGTTTGGTAATGGTGATGGCAATTCAAGGTATAGCTCGGCTTACACAGAAATTTGCTCATCCGCAGCACAACATTTTGCCCGGATTCGTGAAGTTCTTATTGAACGAAGTGTGATGTCTACATTGAATTCTGGTTTTTTAACTCCATGCCGAGAAAGACTTGTAGTGGCACTTTGTTTGGAACTATTTGCTGTAAATGACGAGAAGTTCACAGACATGTTCGTAGCTCCAGGTGCTATTGAGATACTTCAGAATGAAAGACAGTCTCTCCAAAAGCGCCAAAAGATTCTGCAAACATGTTTGAATGAGTTCAAAACTGTAGCTCAATCACTTTGTTGA 2466 45.13 MASSNSFFTTPTKTPSEKSSRKVHNSSRMDASESRSRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGNPVVLASAIADIIKSRTEALLKKTKSAVSSKPIVMRAEYAHCPNLTIIDTPGFVLKARKGEPENTPEEILSMVKSLASPPHRILLFLQQSSVEWCSSLWLDSIREIDPAFRRTIVVVSKFDNRLKEFSDRWEVDKYLSASGYLGDNTHPFFVALPKDRNTVSNDEFRRQISQVDSEVLRHLRDGVKGGFDEEKYRSYIGFGCLREYLESELQKRYKEAAPATLALLEQRCGEVASELCRMESKIQATSDIAHLRRYAMLYTASISNHVSALIEGAADPAPEQWGKTTLEEQSGSGIGSWPGVTSEVKPANSSLRLYGGAAFERVMFEFRCAAYSIECPSVSREKVANILLAHTGKRGGRGLTEAAAEIARAAARSWLAPLLDTACDRLAFVLENLFDLALERNRAYESQNGKKHCSMDGYVGFHAALRHAYNRFLKDLAKQCKQLLRHHLDSVTSPYSLVCYENDFEGGSLSNASSFQKINRVSAGLFSFELSDCGTVSHDETMKDQENIPPEKNIQQITPGKGTESREALRECQMTIPETPSPEQPCDVGYGVKKEFVNGMDIGVRKRASRVTRNSSRMGGQDGGGTLFGNGDGNSRYSSAYTEICSSAAQHFARIREVLIERSVMSTLNSGFLTPCRERLVVALCLELFAVNDEKFTDMFVAPGAIEILQNERQSLQKRQKILQTCLNEFKTVAQSLC 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 109011180 109015617 - Tan0010387.1 Tan01g4390 741814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4390 821 FunFam Dynamin-related protein 5A 26 392 - -
Tan01g4390 821 MobiDBLite consensus disorder prediction 690 713 - -
Tan01g4390 821 SMART dynamin_3 34 268 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g4390 821 MobiDBLite consensus disorder prediction 1 16 - -
Tan01g4390 821 MobiDBLite consensus disorder prediction 17 35 - -
Tan01g4390 821 CDD DLP_1 55 341 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g4390 821 PANTHER DYNAMIN 39 813 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Tan01g4390 821 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 54 341 IPR030381 GO:0005525(InterPro)
Tan01g4390 821 PRINTS Dynamin signature 229 245 IPR022812 -
Tan01g4390 821 PRINTS Dynamin signature 160 177 IPR022812 -
Tan01g4390 821 PRINTS Dynamin signature 57 75 IPR022812 -
Tan01g4390 821 PRINTS Dynamin signature 82 99 IPR022812 -
Tan01g4390 821 Gene3D - 24 394 IPR027417 -
Tan01g4390 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 348 IPR027417 -
Tan01g4390 821 Pfam Dynamin family 60 240 IPR045063 -
Tan01g4390 821 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4390 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4390 Tan-Chr1:109011180 Tan02g1293 Tan-Chr2:36181245 4.50E-48 dispersed
Tan01g4390 Tan-Chr1:109011180 Tan07g1924 Tan-Chr7:71037933 4.00E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g204 . Blo03g01548 . . . Bpe08g01021 . . . . . . . . Sed06g0329 . Cpe02g00700 Bhi09g03433 Tan01g4390 Cmetu01g0301 . Hepe01g1389 Mch11g1066 . Cla11g01759 Cam11g1826 Cec11g1846 Cco11g1853 Clacu11g1986 . Cre11g2203 Cone6ag0150 Cone9ag0176 . . Lsi04g02069 Csa04g02340 Chy07g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011471 0 1 1 0 1 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 2 1 2 27