Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4394 ATGGAGGCATCGTCTGATCACCTTAAGAACCAGGATGATTTATCTGGGGTTTGTGAGGAAGATATACTAGCTGATCCTTATGTGCGTTCTCTTAAATGGAGTGATGTTAGCTTGAGGCAATGGTTGGATAACCCAGAAAGATCCGTGGATGCTCTTGAGTGCCTTCATATATTTAGGCAAATTGTGGAGATTGTTAACATTGCTCATGCTCAAGGCATTGTTGTTCACAATGTGCGTCCTTCATGTTTTGTTATGTCCTCTTTCAACCATGTAACCTTTATTGAGTCGGTATCATGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGCCTGAATAGTCAATCTGCAGAGGTTAAAAAATCATCTTCTCCCTTCCCAAGCAGCCTTGGAAGTGAGGGTTTTCGATCTGTTATGACCCCCATAAATGCTTTGTCGGAAACTAGTTGCATGCAGTCAAGCTCAGTATATGCAGCCCAAATATCATTAAATGAAGGATCTGGAGAATGTAGAAGAAAGGATAGAAGACATATTGAAGAAGCTGAAGATAAGATGCAATCATTTCCAATGAAACAGATATTGGCCATGGAGACTACTTGGTACACTAGCCCAGAAGAGGCTTCTGGTGGCCCAAGTTCCAGTGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTCGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAGAAGAGTAGAACTATGTCCAGCTTGAGGCATAGAGTGCTTCCTCCTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGAGCCAAGTAATCGACCTAAGCTAAGTGAGTTATTGCAAAGTGAATTTCTCAATGAACCAAGAGACGACCTTGAAGAACGTGAAGCAGCAATCGAGCTTAGGAAAAGAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTGGTCATAAGTTGCAAGATACTATTTCATTTCTGTGCAGTGACATTGAACAAGTTATGAGGCACCAAACTAATTTCAAGAAAAAGAGTAGGTCATGTCCAGATCTAGAGAAGGACAATCATTTGCCATTAAATCTCCCTTCAATGACTCCTGTTGAAAATACTGATTCTGCTGGCTTGGGATCAAGGAAACGATTGAGGCCAGGAATTTTGATCCACGATTTAGAAGCATGTGGTGATAATCTTGATGTCTGTGAGAAGTCAAGTTCAGCCAATGAAAATGAACAAGGTGTACTTTTTAAGAGTTCTCGATTGATGAAGAACTTCAAGAAATTGGAGTTAGCCTATTTTTTGATGAGAGGTAGAGTAAACAAGTCATCAGGGAGGCAGTTTGCTAAACACTCGTCAATAAGTAGCGATGGTAGAGGGTCTGTTGTTTTGACTGAAAGAAGTTCAGTTAATAATTTGGCTTCGAAAGAGAGTTGCAATGATAATAGACAAGGTGGGTGGATAAGTCCGTTCCTGGAGGGATTGTGCAAGTATCTATCCTTTAGCAAGTTAAAAGTCAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACCTAGTATGTTCTCTCAGTTTTGATCGTGATGGAGAATTTTTTGCCACGGCTGGTGTTAATAGGAAAATTAAAGTGTTTGGATATGATTCAATCGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCTAGCAGGTCGAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAGGGTGTCGTGCAGGTATGGGATGTCACGAGAAGTCAAGTAGTCACTGAAATGGGAGAACATGAGAGACGTGTATGGTCCATTGACTTCTCATCAGCAGATCCAACAATTTTGGCTAGCGGGAGTGATGATGGTTCAGTTAAGCTCTGGAGTATCAATCAGGCAATTCTATTTTTGCACTTGGTGGATGTCAGCTTTGAAACTAAACGGTATAAGTATCGGCACAATCAGAACAAAAGCCAATGTCTGCTGTGTACAATTTCCTGTGGATTCTGGTCGGTCCCTTGCCTTTGGTTCAGCTGA 2097 41.15 MEASSDHLKNQDDLSGVCEEDILADPYVRSLKWSDVSLRQWLDNPERSVDALECLHIFRQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESVSCSDSGSDSLEDGLNSQSAEVKKSSSPFPSSLGSEGFRSVMTPINALSETSCMQSSSVYAAQISLNEGSGECRRKDRRHIEEAEDKMQSFPMKQILAMETTWYTSPEEASGGPSSSASDIYRLGVLLFELFCSFSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSNRPKLSELLQSEFLNEPRDDLEEREAAIELRKRIEEQELLLEFLLLMQQRKQEAGHKLQDTISFLCSDIEQVMRHQTNFKKKSRSCPDLEKDNHLPLNLPSMTPVENTDSAGLGSRKRLRPGILIHDLEACGDNLDVCEKSSSANENEQGVLFKSSRLMKNFKKLELAYFLMRGRVNKSSGRQFAKHSSISSDGRGSVVLTERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQAILFLHLVDVSFETKRYKYRHNQNKSQCLLCTISCGFWSVPCLWFS 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 109042610 109063711 - Tan0000462.1 Tan01g4394 741818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4394 698 Coils Coil 291 311 - -
Tan01g4394 698 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 616 651 - -
Tan01g4394 698 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 651 IPR001680 GO:0005515(InterPro)
Tan01g4394 698 MobiDBLite consensus disorder prediction 355 387 - -
Tan01g4394 698 SMART serkin_6 1 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4394 698 SMART WD40_4 609 649 IPR001680 GO:0005515(InterPro)
Tan01g4394 698 SMART WD40_4 521 556 IPR001680 GO:0005515(InterPro)
Tan01g4394 698 SMART WD40_4 567 606 IPR001680 GO:0005515(InterPro)
Tan01g4394 698 MobiDBLite consensus disorder prediction 105 131 - -
Tan01g4394 698 PANTHER PROTEIN SPA1-RELATED 2 29 653 IPR044630 GO:0009640(InterPro)
Tan01g4394 698 Gene3D - 502 686 IPR015943 GO:0005515(InterPro)
Tan01g4394 698 Pfam WD domain, G-beta repeat 613 649 IPR001680 GO:0005515(InterPro)
Tan01g4394 698 Pfam WD domain, G-beta repeat 528 555 IPR001680 GO:0005515(InterPro)
Tan01g4394 698 ProSiteProfiles Protein kinase domain profile. 1 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4394 698 SUPERFAMILY Protein kinase-like (PK-like) 35 298 IPR011009 -
Tan01g4394 698 Gene3D Transferase(Phosphotransferase) domain 1 34 296 - -
Tan01g4394 698 SUPERFAMILY WD40 repeat-like 525 673 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4394 K26557 - - csv:101205812 1155.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4394 Tan-Chr1:109042610 Tan07g1570 Tan-Chr7:66874193 5.80E-97 dispersed
Tan01g4394 Tan-Chr1:109042610 Tan01g4395 Tan-Chr1:109042610 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45