Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4417 ATGGGAAATTTCTCAATCCCATTTCACTTGTCTTGCAGGCGTGTGTCATTTCTCTGTGGGCGAGCTGGAGTTTGTGCCCTTGGTGCAGTTACAGCAAAGCTTGCTAACGATGGAAGACTAGTTGACCATTACTTGGAAAAGTTTAAAGATATCAAACTACCTAGTGATTTACCAAATGAACTACTATATGGCAGAGTAGGGTTCTTATGGGCTTGTTTGTTTCTAAACAAGCACGTTGGTCAGAACACAATATCTAACACTATTATGAGATCGGTTGTGGATGAGGTTATCGAGGCTGGTAGACAATTGGGTAAGAAGGGGAAATCTCCATTGATGTATGAATGGCATGGGAAGAAGTACTGGGGTGCTGCACATGGACTCGCTGGAATTATGCATGTCTTGATGAACATGGAACTGAAACCAGATGAGGTCAAGGATGTCAAGAGTACACTACGTTACATGATTAAAAATCGGTTTCCAAGTGGCAATTATCCTTCGAGTGAAGGAAATGATTCTGATCGGTTGGTGCACTGGTGCCATGGGGCTCCTGGGGTTGCACTCACCCTCATAAAAGCAGCTGAGGTTTTTGGAGACGATGAATTTCTGCAAGCAGCATTAGATGCTGGGGAAGTCGTCTGGAACCGTGGTCTGCTCAAACGGGTTGGCATCTGTCACGGAATCAGCGGTAACACATACTTGTTTCTTTCCCTCTACCGGTTGACTGGTGATATCGTATACTTGTACAGAGCCAAAGCATTTGCATGCTTTCTGCATCAGAATGCAGAGAAGCTAATTTCAGAAGGGAAGATGCATTCTGGTGATCGCCCTTGTTCCTTGTTTGAAGGAATTGGGGGAATGGCTCATCTCTTTTTTGACATGAATGAGCCATCTGCAGCAAGGTTCCCAGCTTATGAACTGTAA 921 44.52 MGNFSIPFHLSCRRVSFLCGRAGVCALGAVTAKLANDGRLVDHYLEKFKDIKLPSDLPNELLYGRVGFLWACLFLNKHVGQNTISNTIMRSVVDEVIEAGRQLGKKGKSPLMYEWHGKKYWGAAHGLAGIMHVLMNMELKPDEVKDVKSTLRYMIKNRFPSGNYPSSEGNDSDRLVHWCHGAPGVALTLIKAAEVFGDDEFLQAALDAGEVVWNRGLLKRVGICHGISGNTYLFLSLYRLTGDIVYLYRAKAFACFLHQNAEKLISEGKMHSGDRPCSLFEGIGGMAHLFFDMNEPSAARFPAYEL 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 109319780 109322352 + Tan0012857.2 Tan01g4417 741841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4417 306 PRINTS LanC-like protein superfamily signature 120 136 IPR007822 GO:0031179(InterPro)
Tan01g4417 306 PRINTS LanC-like protein superfamily signature 59 74 IPR007822 GO:0031179(InterPro)
Tan01g4417 306 PRINTS LanC-like protein superfamily signature 221 234 IPR007822 GO:0031179(InterPro)
Tan01g4417 306 PRINTS LanC-like protein superfamily signature 276 293 IPR007822 GO:0031179(InterPro)
Tan01g4417 306 PRINTS LanC-like protein superfamily signature 175 195 IPR007822 GO:0031179(InterPro)
Tan01g4417 306 PANTHER LANC-LIKE PROTEIN 13 305 - GO:0005886(PANTHER)
Tan01g4417 306 SMART LANC_like_2 2 306 IPR007822 GO:0031179(InterPro)
Tan01g4417 306 CDD euk_LANCL 9 302 - -
Tan01g4417 306 SUPERFAMILY LanC-like 13 306 - -
Tan01g4417 306 PRINTS Eukaryotic LanC-like protein family signature 237 255 IPR020464 -
Tan01g4417 306 PRINTS Eukaryotic LanC-like protein family signature 192 213 IPR020464 -
Tan01g4417 306 PRINTS Eukaryotic LanC-like protein family signature 89 104 IPR020464 -
Tan01g4417 306 PRINTS Eukaryotic LanC-like protein family signature 155 170 IPR020464 -
Tan01g4417 306 Pfam Lanthionine synthetase C-like protein 13 306 IPR007822 GO:0031179(InterPro)
Tan01g4417 306 Gene3D - 6 306 IPR012341 GO:0005975(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4417 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4417 Tan-Chr1:109319780 Tan05g0781 Tan-Chr5:5700764 3.20E-124 dispersed
Tan01g4416 Tan-Chr1:109319780 Tan01g4417 Tan-Chr1:109319780 2.40E-175 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g259 . Blo03g01538 . Bda09g00498 . Bpe08g01031 . . . . Cma01g01198 . Car01g01023 . Sed01g0663 . Cpe02g00711 Bhi09g03396 Tan01g4417 Cmetu07g0753 . Hepe01g1372 Mch11g1087 . Cla11g01777 Cam11g1841 Cec11g1862 Cco11g1872 Clacu11g2003 Cmu11g1812 Cre11g2220 Cone6ag0132 Cone9ag0157 . . Lsi04g01320 Csa04g02360 Chy07g00089 . . . . . . . Bma07g01188 . . Cmo01g01252 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002987 1 1 1 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 2 2 2 2 2 2 4 4 3 49