Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4420 ATGATGAACAAATCCGTGGACGAAGACGACGAAGAAGAGTGTTTCTACGAGTCCCTTGATCGCATTGCTTCCTCAAGTTCCTGTTCCACTTCCAATTCCGATGACGATAGAGATTCGAACGCGTACTCCCCTAATTATGATTCCGAGCACCCTTTTCCGATACCCAAATTCCCAATGGCTGTTTCGAACTATGATATTTGGATCTCCGAGCCGGCCTCTGTGTTGGAGCGCCGTAGCCGTCTTCTTCGAGAAATGGGTCTTAGCGGTGACCCTTCTCTCTCTCGGTCTAATACGGCTTTGGAATTGGATCATAGAGAAAAGGGTGTTGCCGATTTTGGTCGATCGGTGTCGTCAGATTATTTGAGTCGTCAACAACAGCAGCCCCCTGTCATCATCCGCTCGAAATCGGATGGTTCGGCTGATTGTAACAGGAACACGAGCTCCACTCAGGCTTCCGGCAGTGATGCTGATAATCAGTGTAATTATTCGTCGTCTATTAGTTCTCCTTCAATTCTTTCATTTCATTCGGTCAATGAGACCACCACCACTTCATTTGCAAATAGCCGTAATCGTGTAGTTGTCAAGTCCCGAAGCTGTAAGAGTGAGGGAGCTCCATCAGTTGCTTATATTGCTTCACAGCATAAGCCGCCTTCTGGGAAAAATTGTAGATGGGCGGATGAGATTCGAAGTGATTCGATGGTTTTGAATGCCAATTCTGATCCTAATCCATTGTCTATATCTCAGAATGGTGAGACTAGACAAGAGGTTAGCGAGGATTCGGCTTCTTCTACCAGTGGAAAGGTCGATGAGAAAGTCTGCACTATCAAAGATCTTGACAATGGGAAAGAGTTTGTTGTGAATGAGATTAGTGAAAATGGTATGTGGAACAAGCTCAAGGAAGTGGGCACTGGGAGACAGTTGACCATGGAGGAGTTTGAGATGTGTGTTGGGCATTCACCCATTGTTCAAGAACTGATGAGGCGGCAGAATGTGGAGGATGGTTGTAACGAAAATGTCGATTTGAATGTGAATGGGGATATCGGTAGCAGTTCGAAATTGAAGAAGAAAGGAGGTTGGTTTAAGAGTATAAAGAGTGTTGCTAGCACGGTGAAGGGTCAAAAGGAGAGACGTAGCAGTGACGAGAGGGATACTTCATCCGAGAAGGGTGGAAGGAGGTCAAGCTCAGCAACAGATGATAGCCAAGATGTTTCTTTTCATGGACCAGAGAGAGTAAGAGTTCGGCAGTATGGAAAATCAAGTAAAGATTTGTCTGCACTCTACAAGAGCCAAGAGATACAGGCCCACAGTGGGTCAATATGGACCATTAAGTTCAGTTTGGATGGGAAGTATCTTGCAAGTGCAGGAGAGGACCGTATCATTCATGTTTGGCAGGTAGTTGAGTCGGAGAAGAAGGGTGATCTACTGATGGAAAAACCAGAAGAAGGGAATTTGAGTCTCTTATTTGCAGCTAATGAGTCACCAGAACCCACTTCATTATCCCCAAATGTGGATAGCCATCATGAGAAGAAGAGAAGAGGGAGATCTTCTATTAGCCGAAAATCGGTGAGCTTGGAGCATGTTATAGTGCCTGAGACTGTATTTGGGCTTTCAGAAAAACCCATCTGTTCATTCGAGGGACATCTTGATGTTGTGCTTGACCTTTCTTGGTCCAAATCTCAGCATTTGCTCTCATCTTCAATGGACAAAACTGTGAGGCTCTGGCACTTGTCAAGCAAATCCTGTTTGAAAATCTTTTCACACAGTGATTATGTAACTTGCATCCAGTTTAATCCTATTGACGATAGATACTTCATTAGTGGATCGTTAGATGCTAAAGTTCGTATATGGAGTATTCCAGATCGTCAAGTCGTTGATTGGAGTGACTTGCATGAGATGGTGACCGCTGCTTGCTATACACCTGATGGCAAGGGTGCATTGGTTGGTTCTTACAAGGGAAGCTGCCGATTGTACAGTACTTCTGAGAACAAGATGCAGCAAAAAAGTGAAATAAATCTGCAGAACAAGAAGAAAAAATCCAGTCACAAGAAAATTACTGGGTTCCAGTTTGCTCCAGGAAGTTCGTCAGAAGTGATCATTACATCTGCAGATTCACGCATCCGAGTGGTCGATGGTGTTGATCTGGTCCAGAGGTTTAAAGTGACCTTGGATCTGATTGATTATCTTCAAAGTCCAGTTTCTCCGCTGCTTAAATTTTCTTATCTCCAGGCTCGGATCTAA 2238 44.41 MMNKSVDEDDEEECFYESLDRIASSSSCSTSNSDDDRDSNAYSPNYDSEHPFPIPKFPMAVSNYDIWISEPASVLERRSRLLREMGLSGDPSLSRSNTALELDHREKGVADFGRSVSSDYLSRQQQQPPVIIRSKSDGSADCNRNTSSTQASGSDADNQCNYSSSISSPSILSFHSVNETTTTSFANSRNRVVVKSRSCKSEGAPSVAYIASQHKPPSGKNCRWADEIRSDSMVLNANSDPNPLSISQNGETRQEVSEDSASSTSGKVDEKVCTIKDLDNGKEFVVNEISENGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGCNENVDLNVNGDIGSSSKLKKKGGWFKSIKSVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKDLSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGDLLMEKPEEGNLSLLFAANESPEPTSLSPNVDSHHEKKRRGRSSISRKSVSLEHVIVPETVFGLSEKPICSFEGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPIDDRYFISGSLDAKVRIWSIPDRQVVDWSDLHEMVTAACYTPDGKGALVGSYKGSCRLYSTSENKMQQKSEINLQNKKKKSSHKKITGFQFAPGSSSEVIITSADSRIRVVDGVDLVQRFKVTLDLIDYLQSPVSPLLKFSYLQARI 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 109327347 109338387 - Tan0009921.2 Tan01g4420 741844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4420 745 PANTHER WD REPEAT DOMAIN 44 13 719 IPR040324 -
Tan01g4420 745 SMART WD40_4 425 464 IPR001680 GO:0005515(InterPro)
Tan01g4420 745 SMART WD40_4 671 710 IPR001680 GO:0005515(InterPro)
Tan01g4420 745 SMART WD40_4 537 575 IPR001680 GO:0005515(InterPro)
Tan01g4420 745 SMART WD40_4 578 617 IPR001680 GO:0005515(InterPro)
Tan01g4420 745 SMART WD40_4 620 658 IPR001680 GO:0005515(InterPro)
Tan01g4420 745 MobiDBLite consensus disorder prediction 235 268 - -
Tan01g4420 745 Gene3D - 418 734 IPR015943 GO:0005515(InterPro)
Tan01g4420 745 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 584 IPR001680 GO:0005515(InterPro)
Tan01g4420 745 MobiDBLite consensus disorder prediction 370 395 - -
Tan01g4420 745 MobiDBLite consensus disorder prediction 21 39 - -
Tan01g4420 745 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 578 - -
Tan01g4420 745 SUPERFAMILY WD40 repeat-like 427 714 IPR036322 GO:0005515(InterPro)
Tan01g4420 745 MobiDBLite consensus disorder prediction 21 54 - -
Tan01g4420 745 Pfam WD domain, G-beta repeat 580 617 IPR001680 GO:0005515(InterPro)
Tan01g4420 745 Pfam WD domain, G-beta repeat 430 463 IPR001680 GO:0005515(InterPro)
Tan01g4420 745 Pfam WD domain, G-beta repeat 539 574 IPR001680 GO:0005515(InterPro)
Tan01g4420 745 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 618 IPR001680 GO:0005515(InterPro)
Tan01g4420 745 MobiDBLite consensus disorder prediction 117 160 - -
Tan01g4420 745 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 432 465 - -
Tan01g4420 745 ProSiteProfiles Trp-Asp (WD) repeats profile. 432 465 IPR001680 GO:0005515(InterPro)
Tan01g4420 745 MobiDBLite consensus disorder prediction 493 517 - -
Tan01g4420 745 MobiDBLite consensus disorder prediction 370 416 - -
Tan01g4420 745 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 584 618 - -
Tan01g4420 745 MobiDBLite consensus disorder prediction 116 160 - -
Tan01g4420 745 PRINTS G protein beta WD-40 repeat signature 562 576 IPR020472 -
Tan01g4420 745 PRINTS G protein beta WD-40 repeat signature 604 618 IPR020472 -
Tan01g4420 745 PRINTS G protein beta WD-40 repeat signature 451 465 IPR020472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4420 K20241 - - csv:101208316 1281.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4420 Tan-Chr1:109327347 Tan03g0959 Tan-Chr3:66048793 5.40E-117 dispersed
Tan01g4419 Tan-Chr1:109327347 Tan01g4420 Tan-Chr1:109327347 0.00E+00 tandem
Tan01g4420 Tan-Chr1:109327347 Tan01g4421 Tan-Chr1:109327347 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34