Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4425 ATGGATCCTCGCACCCGTTTGGATCATGCTCTGTTTCAGCTCACTCCCACTAGAACCAGATGTGAACTGGTTATCTCTGCCAATGGAGGTGCTACTGAGAAACTGGCATCTGGGCTTCTTCAGCCATTTATCTCCCACCTCAAATGTGCTAAAGATCAGATTTCTAAAGGGGGTTACTCCATTACTCTTCGCCCAGTTGCAGGATCAAACGCTTCTTGGTTCACTAAGGGCACTCTTCAGAGATTTGTGAGATTTGTCAGCACGCCTGAGGTTCTTGAGAGATTTGTTACTATAGAGAAGGAGATTGTGCAGATCGAGAATTCTATGTCGATAGATGCAGAAGGAAACACAACTGCTGCTGATTGGAACTCGAAAAGATCTAGCCCGACGTCGAGGGTGAAGGGTGAATCTGATGAAAATAACGACGATGCTGCATCAAAAGAGAATCCCAAGATCCGCCTTCAACGTGTTCTAGAAACTCGAAAGGCTGTGCTACACAAAGAGCAAGCAATGGCCTATGCCCGTGCCTTAGTTGCAGGATATGAGCTGGATCATATTGACGATCTTATATCTTTTGCTGATGCTTTTGGAGCTTCACGTTTGAGGGAAGCATCTATAAATTTTATGGACTTATGCAAGCGAAAGAATGAAGATAAGCTCTGGATAGACGAAATAGCAGCTATGCAGGCATTCTCTCAGCCAGCATTTCCCTACTCAGAAACTTCTGGCATCATTCTAGCTGGTGAAGACAACGAAACTAACATCAATGCTCAAGCATCAAGATCTGATTCGTCTGCAAGTCAAGGAAGTTTGGAAAACAATCAAGATGGTAGTCTTCCGAAATCAGCGCAAATGTCGATGAATGGGAAAGCCCAAGTGCCAATGACATGGCCTAATCATCTTCCTCAATATATGCACAACTTTCAAGGCCCTTTATATCCTCCATATCAAGGATATCTTTTCCCCGGAATGCAGATGCCACCACCATATTACCCAGGGAATATGCAGTGGCAATCAAATGCTGAAGACTCGAGTCTTGCTTCTGATCGAGAGCCTGACAGTCATAGGAATTCTAAATCTCATAGGAACAAGAAGAAACATTCACATAAGGAGGTTTCCAGATCTTCAGAACTAGAAGCAACTACAGAGTCCGGTGAATCCAGTGTTGACAGTGAATCGGACCGACAATCTGCGGATGATAAAAAACAGTATTCAATAGAAAAGATACGTAAGAAAAGGCATGGCAAGAAATCCTCAAGAACGGTTGTTATACGGAATATCAACTACATAACCTCAAAGAGGAATGGTGAAAAGGGCAGCCACTCAGAGGATGAGTCATCTGATGAGGGTGAATATATTGATGGAGATTCCATCAAACAGCAGGTTGAGGAAGCTGTTGGGACATTGGAGAGAAGACATAAATCAACCGGTCGACACCAAAAGAAACAAAATGGCCTTAGCAATGTTGATGGTTTAAATGATTCTGCAGGACAGGAGACTAACCGGGTATCAAACAATTCAGAGGGAGAAAAGATCAGTAGTCCATGGGATGCTTTCCAGAGTCTTCTTATGAGAGAAAAGGAGCCGGAAAACTCTGGTGAACTGACCTCCGTTCAGGATCAAGATGGCCATTTTACAGTCAAACCCGAGGGAAGATCACCTATGCTAAACTTGGAATCAGAGAGAGCACCAAGACAGCGTGAAGTTTCAAGTGATTCTTTTGTTGTCACCAACAGGAATTCAGGTAATGAAGGGAGAACACATCTTGAAAATTTTGAAGCTGGTGACGTTGCCAACCCAATTAATAGAAGGAGAGAGAGCACATATGAAGAGTTATTATTTTCACAAAGAGGTGGAGAATCAGGGAACAATGTGCATTCCACCATGTCCGATTTTACCAATGTGTCTTCCAGAATGAAAAATCAAAGAGAAGGCGATTGGTTTGTCAGCAATCCAGCTGATAAATCAGAAAATCAGTATCAAAACGTAGGTCCCAGAGTTTACGACACCGACTTCTCTTCATCAGCTCAAGACAATTTCTATGCAGAGAAAAACAAGAAAGATGTGTTGGTTGATGACTCTTTCATGATTCAGCCTCGACCATTAGTAGATGACCAATCTGACTTTCAATCTAGACGAGATATAAGCATGGTGTCGGACATTGTTGGGGATGCTGAAAATGAGTATGTCAAACAAGAAGCCTCAAGAGATGATAAGCCTGCAACATTTGGTGTCAGTGAACCAGATGATCTTTACATGATGCTTGATCGTGATATAGTTACAGAGCATACGGTAGCATCTTGGACCCCAGAAATGGACTATGAAAATAATTTTTCAACAATAGCCAATAGTAAGCACAATGACATTGAGGCCGACAATGGTGGTGATAGCGAGTCACCTGGTTTAGAGAAGAGCAACAAAAGTAAAGAATCTGGGGGCAAAGTTCTAAATAAAGATGCAAGATCCAAATCTTTGGGAGGATCTCATGTTAAGGGCAAATATGATGTTCAATCAAGAACGAGAAAACCACTTTCTGGAAGCAGAACTACAGTTCCGAAGAGCAAATTTGAGAAGGAAGAAGAGACCAGACAGAGAATGGAAGAGTTGGCAATTCAACGCCAGAAAAGAATTGCTGAAAGGAGTGCTTCTAGTAAATTTGGTACTGCGAGTTCTAAGCCTGGTGTGACTAAGATTGAGAAGCCAAATAGCCAATCCCAGGTTCAAGAAGCCAAGAAGTCACCTAAGCCTGTACTTAGGAGTTCAACCATAGATCGCCTTTCAACCGCTCGCACACCTCAGAAGGTATCTGCAACTCAATCACCATCAGGTCAACCAAAAAAGCTGATCTTGAGAGCAAATGGCATTAGCACTCCTACCTCAACAGAAAAGCTCCTTAAATCTGACAACAACGATGGATGGCAAGGAAGACGTAGCAGCATTACCAGCTGA 2949 42.79 MDPRTRLDHALFQLTPTRTRCELVISANGGATEKLASGLLQPFISHLKCAKDQISKGGYSITLRPVAGSNASWFTKGTLQRFVRFVSTPEVLERFVTIEKEIVQIENSMSIDAEGNTTAADWNSKRSSPTSRVKGESDENNDDAASKENPKIRLQRVLETRKAVLHKEQAMAYARALVAGYELDHIDDLISFADAFGASRLREASINFMDLCKRKNEDKLWIDEIAAMQAFSQPAFPYSETSGIILAGEDNETNINAQASRSDSSASQGSLENNQDGSLPKSAQMSMNGKAQVPMTWPNHLPQYMHNFQGPLYPPYQGYLFPGMQMPPPYYPGNMQWQSNAEDSSLASDREPDSHRNSKSHRNKKKHSHKEVSRSSELEATTESGESSVDSESDRQSADDKKQYSIEKIRKKRHGKKSSRTVVIRNINYITSKRNGEKGSHSEDESSDEGEYIDGDSIKQQVEEAVGTLERRHKSTGRHQKKQNGLSNVDGLNDSAGQETNRVSNNSEGEKISSPWDAFQSLLMREKEPENSGELTSVQDQDGHFTVKPEGRSPMLNLESERAPRQREVSSDSFVVTNRNSGNEGRTHLENFEAGDVANPINRRRESTYEELLFSQRGGESGNNVHSTMSDFTNVSSRMKNQREGDWFVSNPADKSENQYQNVGPRVYDTDFSSSAQDNFYAEKNKKDVLVDDSFMIQPRPLVDDQSDFQSRRDISMVSDIVGDAENEYVKQEASRDDKPATFGVSEPDDLYMMLDRDIVTEHTVASWTPEMDYENNFSTIANSKHNDIEADNGGDSESPGLEKSNKSKESGGKVLNKDARSKSLGGSHVKGKYDVQSRTRKPLSGSRTTVPKSKFEKEEETRQRMEELAIQRQKRIAERSASSKFGTASSKPGVTKIEKPNSQSQVQEAKKSPKPVLRSSTIDRLSTARTPQKVSATQSPSGQPKKLILRANGISTPTSTEKLLKSDNNDGWQGRRSSITS 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 109411737 109418595 - Tan0001169.1 Tan01g4425 741849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4425 982 MobiDBLite consensus disorder prediction 114 149 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 388 406 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 481 514 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 785 982 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 953 982 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 131 149 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 421 435 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 920 946 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 852 880 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 258 289 - -
Tan01g4425 982 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 967 - GO:0009416(PANTHER)|GO:0045893(PANTHER)
Tan01g4425 982 MobiDBLite consensus disorder prediction 436 458 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 114 130 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 881 911 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 335 603 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 802 817 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 824 838 - -
Tan01g4425 982 MobiDBLite consensus disorder prediction 570 587 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4425 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4425 Tan-Chr1:109411737 Tan01g4427 Tan-Chr1:109411737 0.00E+00 dispersed
Tan01g4425 Tan-Chr1:109411737 Tan01g4426 Tan-Chr1:109411737 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g263 . . . . . . . . . . . . . . . . . Bhi09g03392 Tan01g4425 . . . . . . . . . . . . . . . . Lsi04g01316 . . . . . . . . . . . . . Cmo09g00872 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003665 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 0 2 2 1 1 2 1 1 1 1 1 4 3 2 42