Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4450 ATGTGGGGCTTATCCTGCTACTTCCTTTCTTATCCTTCGCCTAGTTTCAGAGCTTCAGCACCGGCGGCAACCCTTCACTCCGGCGCTTCCCTGCCGGTGCCCGTCGATCGGAAACATTACACTTCCGATAGCCCATTTGCTCCAGAGGTTGTTAAGGCGGTAGACTCCTTGCAGTATGAATTCAGGGCAGTGGATAATTTGGTGGCACGTAATACTGCTAAAGTTCTCAAAGCCTTTCAGAATGCTCGGTTAGGATCTCATCATTTTGGAGGATCCACTGGTTATGGTCATGATGAAGCTGGAGGACGGGAGGCACTTGACAATGCTTTTGCTGAGATAGTTGGAGCGGAATCTGCCATAGTCCGATCACAGTTTTTCTCAGGTACTCATGCTATTACATGTGCCTTATTTGCGCTTTTGAGGCCAGGGGATGAGCTTTTAGCAGTAGCTGGTGCTCCATATGACACACTAGAGGAAGTTATTGGAAAAAGAGATTCTCAGGGGCTAGGTTCCTTGAAAGATTTTGGAGTAGGATATCGAGAAGTTCCACTTGGTGAGGATGGTGGACTTGACTGGGAAAAGCTTGCAAGTTCTTTGAAACCTCAAACAAAATGTGCACTCATACAAAGGTCATGTGGTTATTCTTGGCGGCGAAGTTTAAGTGTTGATGAAATAGGAAGAGCAATAAAACTGATCAAGATGCAAAACCCTGATTGCTTGGTGATGGTGGATAACTGTTATGGAGAATTTGTGGAAACCACTGAACCTCCAACTGTGGGCGCGGACTTAATTGCAGGAAGTTTGATAAAAAATCCTGGTGGAACGCTCGCACCTTGTGGTGGATATGTTGCAGGTCGAGACAAATGGGTGAGAGCGGCTGCAGCTCGTTTATCTGCACCCGGCTTGGGCGTGGATTCGGGTGCTACCCCCGGTGATATCATGAGGACATTTTTTCAGGGCTTATTCCTTTCACCTCAAATGGTTGGTGAGGCAGTTAAGGGAATGATCCTAGTAGCTGAAGTCATGGCATTAAAAGGCTACAAAGTGCAGCCACTCCCACGCGCACCCCGCCACGACACTGTACAGGCAGTCCAACTCGGAAGTCGTGAACTTTTGCTAGCATTCTGCGAGGCCGTACAGAGAAGCTCTCCTGTCGCTTCATTTACTAAACCTGTTCCAGGAATAACTCCTGGATATGCATCAGAGAGTCCATTAAACTCAAACAGGTATTCGGTCCAAAAATTGAAATTGGGATCCGATCCAAAAATGGTGAACCTAAAGCGGCACCATCTTAAGAGGGCATGCAGTAGAACGTCTACACCAATAATTGGGCTCAAAGGCCATTAA 1347 47.22 MWGLSCYFLSYPSPSFRASAPAATLHSGASLPVPVDRKHYTSDSPFAPEVVKAVDSLQYEFRAVDNLVARNTAKVLKAFQNARLGSHHFGGSTGYGHDEAGGREALDNAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPGDELLAVAGAPYDTLEEVIGKRDSQGLGSLKDFGVGYREVPLGEDGGLDWEKLASSLKPQTKCALIQRSCGYSWRRSLSVDEIGRAIKLIKMQNPDCLVMVDNCYGEFVETTEPPTVGADLIAGSLIKNPGGTLAPCGGYVAGRDKWVRAAAARLSAPGLGVDSGATPGDIMRTFFQGLFLSPQMVGEAVKGMILVAEVMALKGYKVQPLPRAPRHDTVQAVQLGSRELLLAFCEAVQRSSPVASFTKPVPGITPGYASESPLNSNRYSVQKLKLGSDPKMVNLKRHHLKRACSRTSTPIIGLKGH 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 109832010 109839778 + Tan0004681.3 Tan01g4450 741874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4450 448 Pfam Methionine gamma-lyase 52 402 IPR009651 -
Tan01g4450 448 SUPERFAMILY PLP-dependent transferases 59 398 IPR015424 -
Tan01g4450 448 Gene3D - 98 306 IPR015421 -
Tan01g4450 448 PANTHER CYS OR MET METABOLISM PYRIDOXAL-PHOSPHATE-DEPENDENT ENZYME 1 402 IPR009651 -
Tan01g4450 448 Gene3D - 307 404 - -
Tan01g4450 448 Gene3D - 47 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4450 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4450 Tan-Chr1:109832010 Tan01g4452 Tan-Chr1:109832010 8.00E-233 dispersed
Tan01g4449 Tan-Chr1:109832010 Tan01g4450 Tan-Chr1:109832010 4.50E-233 tandem
Tan01g4450 Tan-Chr1:109832010 Tan01g4451 Tan-Chr1:109832010 2.60E-260 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g284 . Blo03g01523 . . . . . . . . . . . . . Cpe06g00715 . Bhi09g01998 Tan01g4450 . . Hepe01g1356 Mch11g1110 . Cla11g01800 Cam11g1866 Cec11g1890 Cco11g1896 Clacu11g2029 Cmu11g1835 Cre11g2242 . . . . Lsi04g01284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006193 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 5 1 34